PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007988.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GATA
Protein Properties Length: 149aa    MW: 16264.4 Da    PI: 9.1458
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007988.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA27.35.1e-0995114120
        GATA   1 CsnCgttkTplWRrgpdgnk 20 
                 C+ C++t+Tp+WR+gp g++
  Do007988.1  95 CVECRATTTPMWRSGPTGPR 114
                 ******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501149.81689118IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-693112IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.7E-695114IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MRRHPTHRIH SFISLSLPPS LPRNYSLLST TRFQGTEQPT DQTKNQNSPS DPVPNPATDR  60
ACCRLFPPPT PPLMGSADRS EIDGIVVAEK GARSCVECRA TTTPMWRSGP TGPRVSSSSS  120
SPPSVLVLRC SVLFVFARIR FDQVGDSDS
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo007988.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0403893e-44BT040389.1 Zea mays full-length cDNA clone ZM_BFc0088I05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5W4W11e-103A0A1E5W4W1_9POAL; Uncharacterized protein
STRINGSi004417m2e-36(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67212854