PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007990.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GATA
Protein Properties Length: 463aa    MW: 49367.8 Da    PI: 7.2458
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007990.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.81.3e-17360392133
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
                 Cs+C++ +Tp+WR gpdg+ tLCnaCG++y+ +
  Do007990.1 360 CSHCHSPDTPQWRAGPDGPGTLCNACGIRYAAN 392
                 ******************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.596354392IPR000679Zinc finger, GATA-type
SMARTSM004011.8E-16354408IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.52E-14356417No hitNo description
Gene3DG3DSA:3.30.50.104.5E-14358394IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.62E-14359415No hitNo description
PfamPF003201.9E-15360393IPR000679Zinc finger, GATA-type
PROSITE patternPS003440360385IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MRTQFHRSLG DVPDNLPECD GMCAPGGGLC CPDDPLNLVL QYFLAPAPAP HETSLAALGI  60
GGSPRHQEQP PPSFGWDQAN GGNFRFLGAG TAPGGGGVWE QDSRGSSSRV PEDVEALDID  120
MYLADAPDGD GDEATICNRS CVTEAMPACG AHAYDALGSV LSNDAPPPLL PPMSAGTLLQ  180
NACRAFDGVV PDHAPSLPAP MPAGGDLHAR GAPLGVASSA LLPMGTLHVC RALVGVVSND  240
TPPLRMHASP SAWTSPASRT SSGCLTPTSE TESPAPVWQP LAWARPRKRR RPPVKCVKRP  300
WSLEFPLHAL SVAPPDENPD DNNDNGNDLS KNTCNNVASG IIRCRRPVPR QRNRQAQRVC  360
SHCHSPDTPQ WRAGPDGPGT LCNACGIRYA ANKLLPEYRP STAPSFRSDQ HSNRHRKVVK  420
LREQKAKETL KVMPNPMPSP SLLPIPPKGN EFMEVCTYIS RGL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1285291PRKRRRP
2286290RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo007990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5VB120.0A0A1E5VB12_9POAL; Uncharacterized protein
STRINGSi028169m1e-171(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16076913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.18e-26GATA transcription factor 4