PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do008027.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family M-type_MADS
Protein Properties Length: 72aa    MW: 8356.83 Da    PI: 10.8569
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do008027.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.24.5e-28252151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                k+ien +nrqvtfskRr g++KKA+EL +LCda++ viifs +g++yeyss
  Do008027.1  2 KKIENPTNRQVTFSKRRMGLFKKANELAILCDAQIGVIIFSGSGRMYEYSS 52
                78***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.24E-25161IPR002100Transcription factor, MADS-box
SMARTSM004324.3E-29153IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.011154IPR002100Transcription factor, MADS-box
PfamPF003191.2E-26350IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-151631IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-153152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 72 aa     Download sequence    Send to blast
LKKIENPTNR QVTFSKRRMG LFKKANELAI LCDAQIGVII FSGSGRMYEY SSPPWRHVKH  60
SFPFHLSSIL MF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo008027.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9625146e-75EU962514.1 Zea mays clone 243332 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008652193.12e-35MADS-box transcription factor 31
RefseqXP_020400356.12e-35MADS-box transcription factor 31
SwissprotQ84NC24e-34MAD31_ORYSJ; MADS-box transcription factor 31
TrEMBLA0A1E5V6Y87e-47A0A1E5V6Y8_9POAL; MADS-box transcription factor 31 (Fragment)
STRINGAC233912.1_FGP0017e-35(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.21e-24AGAMOUS-like 71
Publications ? help Back to Top
  1. Schilling S, et al.
    Non-canonical structure, function and phylogeny of the Bsister MADS-box gene OsMADS30 of rice (Oryza sativa).
    Plant J., 2015. 84(6): p. 1059-72
    [PMID:26473514]