PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do008117.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 121aa    MW: 12985.7 Da    PI: 5.6263
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do008117.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-0581103123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++C+k F ++  L  H++ H
  Do008117.1  81 FSCTYCDKKFYSSQALGGHQNAH 103
                 89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.86E-769116No hitNo description
PROSITE profilePS5015711.38581108IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MEQHSTLIIP PASSEITTPP ILSPPLGLGR LRLCPAVLSL DAMDPSSEGR GGGEGDLDLD  60
LDLNLSLQPS LAPDPEPPGY FSCTYCDKKF YSSQALGGHQ NAHKFERSVA KRARELAAAR  120
R
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo008117.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9687003e-44EU968700.1 Zea mays clone 323547 zinc finger protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803137.13e-49zinc finger protein 2-like
TrEMBLA0A1E5W4T16e-82A0A1E5W4T1_9POAL; Uncharacterized protein (Fragment)
STRINGPavir.Bb02239.1.p4e-47(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.18e-14zinc finger protein 2