PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do008194.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 191aa    MW: 21952 Da    PI: 9.1192
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do008194.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.76.3e-09105153248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 
                       rWT+ E +llv+++ + G g+W++  +t      Rt+ ++k++w+++l
       Do008194.1 105 SRWTAKEVKLLVKGISKCGVGRWSKLKKTYFktSVRTAVNIKDKWRNLL 153
                      59***************************998967************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.74799157IPR017930Myb domain
SuperFamilySSF466898.61E-15101182IPR009057Homeodomain-like
SMARTSM007175.3E-7103155IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-12105154IPR009057Homeodomain-like
PfamPF002499.1E-7106153IPR001005SANT/Myb domain
CDDcd116606.85E-19106154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MEQTELFWAP VQQEEEGLEG LFGDLQLILA SGTACGLQME NYQARDDEIQ QLLDEPRNEA  60
DLDECLSGGL HRSPLWDTAS HHQDTFFGGT PLGKGREFIT RKNNSRWTAK EVKLLVKGIS  120
KCGVGRWSKL KKTYFKTSVR TAVNIKDKWR NLLRAYQENV QKYTLLDLKP PLVEQIRKLA  180
AKHPYPKQRH S
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo008194.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797447.11e-100uncharacterized protein LOC112877369
TrEMBLA0A1E5W3L21e-140A0A1E5W3L2_9POAL; Uncharacterized protein
STRINGPavir.Ia01842.1.p5e-93(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52252134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-14TRF-like 6