PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do008213.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 236aa    MW: 26090.3 Da    PI: 7.5057
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do008213.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM58.42.5e-18351667128
         NAM   7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWk..atgkdkevlskkgelvgl 102
                 F+Pt++elv ++L+++++g + +++ ++ e+d + + Pw+L +++   +++ +fF+ r +  +     +r ++ +g W   +t   ++v++ +  + + 
  Do008213.1  35 FDPTEDELVLHFLRPQLRGFPPRVAGAVLEADPCGAAPWELLARYG-LREQGHFFAARGRGRPF--VVRRaVAGAGAWVhsSTRAGRSVTELGVVVRWR 130
                 9***********************999**************85553.35677******998876..455545689***844667789999978888999 PP

         NAM 103 kktLvfy..........kgrapkgektdWvmheyrl 128
                 + t+ fy           gr+++ ++t+Wvm+ey++
  Do008213.1 131 RVTFCFYargpagaagkGGRQQQQRSTEWVMEEYEI 166
                 99*****888777776447999999*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.30529192IPR003441NAC domain
SuperFamilySSF1019411.23E-2532191IPR003441NAC domain
PfamPF023651.5E-1135166IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGEDEEANLI AEEEAEDEVV DHHAAAGDLG VVDGFDPTED ELVLHFLRPQ LRGFPPRVAG  60
AVLEADPCGA APWELLARYG LREQGHFFAA RGRGRPFVVR RAVAGAGAWV HSSTRAGRSV  120
TELGVVVRWR RVTFCFYARG PAGAAGKGGR QQQQRSTEWV MEEYEITDPR CYRRCDEEGE  180
DHYWVLCRVS KSSKRPAVAP AAAKPASPPA KQRWRRLAEL ESDSGAKAKV SRPLRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo008213.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126096e-50CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816116.11e-108NAC domain-containing protein 18-like
TrEMBLA0A1E5VMC91e-169A0A1E5VMC9_9POAL; Uncharacterized protein
STRINGPavir.Ea04027.1.p7e-92(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137612528