PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do008257.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 511aa    MW: 55882.5 Da    PI: 5.6063
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do008257.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.82.2e-06282303223
                 EETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  C +Cgk F+r  nL+ H+r H
  Do008257.1 282 FCLICGKGFKRDANLRMHMRGH 303
                 5*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.68E-5279307No hitNo description
SMARTSM003550.012281303IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.552281308IPR007087Zinc finger, C2H2
PROSITE patternPS000280283303IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-4283307IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035571330363IPR015880Zinc finger, C2H2-like
SMARTSM0035522368390IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010044Biological Processresponse to aluminum ion
GO:0010447Biological Processresponse to acidic pH
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MEMEGGMSSL ETAMKASSSM ASGTARNADP DQQTIRSNSV EQFYFPRPGQ SLPGIPSFFG  60
PPSSSLYLPN DNEAKVGNQF EPNPSQNTDW DPQAIVSNLT FLEQKIKQVK DIVQAMSNRE  120
NQVAGGSCEL AAKQQLITAD LTSIIIQLIT TAGSLLPSMK NPLLSSNPAV RQLSNTLGSP  180
MGFGVNTDQR PSIDSKTDGP DTGKASGYEE LINSLNTTQD ERDELIKCPN PCGGEGSEPT  240
PMEDHDVKES DDGDHEGENL PPGSYVVLQL EKEEILAPHT HFCLICGKGF KRDANLRMHM  300
RGHGDEYKTA AALAKPTKDS GSEHAPVTRY SCPFVGCKRN KEHKKFQPLK TILCVKNHYK  360
RSHCDKSYTC SRCNTKKFSV IADLKTHEKH CGRDKWLCSC GTNFSRKDKL FGHVALFQGH  420
TPALPMDDVK VSEASEQPQG SEPMACFPCS SSDGISNLDM KMADDARGYY SPLSFDPCFG  480
ALDDFTRPGF DISEDPFSFL PSGSCSYGQQ N
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00196ampDAPTransfer from AT1G34370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo008257.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1847340.0KF184734.1 Saccharum hybrid cultivar R570 clone BAC 170F15 complete sequence.
GenBankKF1849410.0KF184941.1 Saccharum hybrid cultivar R570 clone BAC 189K21 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819567.10.0zinc finger protein STOP1 homolog
SwissprotQ943I60.0STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A1E5WKS60.0A0A1E5WKS6_9POAL; Zinc finger protein STOP1-like protein
STRINGPavir.J14096.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-153C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]