PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do008435.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 179aa    MW: 18415.9 Da    PI: 7.9167
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do008435.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000113052123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C+ Cg++F++   L  H  +H
  Do008435.1 30 FQCKTCGRRFPTFQALGGHRASH 52
                89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.56E-82559No hitNo description
Gene3DG3DSA:3.30.160.605.8E-52858IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.4E-112953IPR007087Zinc finger, C2H2
SMARTSM003550.0533052IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.6123057IPR007087Zinc finger, C2H2
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
PfamPF139125.2E-986110IPR007087Zinc finger, C2H2
SMARTSM003551.387109IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
METGVDTAGV LMLLSQQPHG GGARTGGRVF QCKTCGRRFP TFQALGGHRA SHTRPRPYYA  60
AAGLRRVTTT LEAAHDEGEC AAGPSVHGCP VCGLEFAVGQ ALGGHMRRHR PTAAAGTLRS  120
GDATSVEGED VGAGCAAGGI CLDLNLAPSE NCAKCRKNAG LVGDKVQGVQ ETLMLDCTL
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo008435.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805950.17e-90zinc finger protein ZAT12-like
TrEMBLA0A1E5USH41e-125A0A1E5USH4_9POAL; Uncharacterized protein
STRINGPavir.J32634.1.p2e-86(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62822138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.15e-29C2H2 family protein