PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do008525.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

Trihelix

Protein Properties

Length: 341aa MW: 36865.1 Da PI: 6.7878

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do008525.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	83.5	2.8e-26	51	119	2	70
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 W ++e+l+Li++rrem+ +++++k++k+lWe++s++m+++gf rsp++C++kw+nl k++kk + ++++ Do008525.1 51 WVREETLCLIALRREMDGHFNTSKSNKHLWEAISARMQDQGFDRSPTMCTDKWRNLLKEFKKARSHARS 119 ****************************************************************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	8.513	43	107	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.2E-5	44	109	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-5	47	109	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.37E-5	48	108	IPR009057	Homeodomain-like
CDD	cd12203	9.59E-27	49	114	No hit	No description
Pfam	PF13837	2.4E-18	50	142	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MLLSGPPAAP TPPLLLPESS GEDGGHDSSR AAAAAATGSA GSAPKRRAET WVREETLCLI 60 ALRREMDGHF NTSKSNKHLW EAISARMQDQ GFDRSPTMCT DKWRNLLKEF KKARSHARSS 120 GGGSGAGGNG NAKMAYYKEI DDLLKRSGKA SGSGGCVGSG SGNGAGKSPT SNSKIESYLH 180 FPTDNGFEDA SIPFGPVEGG DNQGTFGGRV ILVKWGDYTK RIGIDGTAEA IKEAIKSAFG 240 LRTRRAFWLE DEDEVVRTLD RDMPIGTYTL HLDDGVTIKL CDANCMQTPQ DKTFYTEDDF 300 RGFLARRGWT LLREYGGYGN AESMDDLRPG VIYQGMRSLG E

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	1e-39	45	139	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do008525.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004984957.1	0.0	trihelix transcription factor GT-1
Swissprot	Q9FX53	1e-115	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A1E5WH98	0.0	A0A1E5WH98_9POAL; Trihelix transcription factor GT-1
STRING	Si036121m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5631	37	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.2	1e-112	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]