PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do008687.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 458aa    MW: 50109.2 Da    PI: 8.893
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do008687.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.8e-18279330155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 + y+GVr++   grWv+e+r+p   +k+ r++lg+f tae Aa+a++ a+++l+g
  Do008687.1 279 PVYRGVRRRGPAGRWVCEVREP---NKKSRIWLGTFATAEAAARAHDVAALALRG 330
                 68****************9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056489.5E-5012224IPR008733Peroxisomal biogenesis factor 11
PfamPF008472.7E-13279330IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-20280340IPR016177DNA-binding domain
PROSITE profilePS5103222.313280338IPR001471AP2/ERF domain
SMARTSM003801.7E-25280344IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-30280340IPR001471AP2/ERF domain
PRINTSPR003673.7E-5281292IPR001471AP2/ERF domain
PRINTSPR003673.7E-5304320IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016559Biological Processperoxisome fission
GO:0044375Biological Processregulation of peroxisome size
GO:0005779Cellular Componentintegral component of peroxisomal membrane
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MSSLETVRGD LALVILYLNK AEARDKICRA IQYGSKFLSN GEPGPAQNVD KSTSLARKVF  60
RLFKFVNDLH ALISPPAKGT PLPLILLGKS KNAMLSTFLF LDQIVWAGRT GIYKNKERAE  120
FLSRIAFYCF LGSNTCTTII ELAELQRLSK SMKKLEKELK HQELYKNEQY RMKLQKSNER  180
LLALIKSSLD IVVAVGLLQL APKKVTPRVT GAFGFTSSLI ACYQTGVQRS SPDPAMEYVD  240
VGYDEQESPE AAGGEYATVM SAPPKRPAGR TKFRETRHPV YRGVRRRGPA GRWVCEVREP  300
NKKSRIWLGT FATAEAAARA HDVAALALRG RAACLNFADS ARLLRVDPAT LATPEDIRRA  360
AIELAEASAQ QDAAAAAAST SSAVEVAPPM AMHQQDTAPY DYAAMYGTMD FDQSYYYDGM  420
GGGAVGGNEW AQTGWHMDGD DDGSGAAGCG SDMTLWSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-142783371271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo008687.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0958200.0FP095820.1 Phyllostachys edulis cDNA clone: bphyem101m06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964390.11e-159peroxisomal membrane protein 11-5
TrEMBLA0A1E5W5R30.0A0A1E5W5R3_9POAL; Peroxisomal membrane protein 11-5
STRINGSi007206m1e-158(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.11e-32C-repeat/DRE binding factor 2