PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do008827.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 215aa    MW: 23913.8 Da    PI: 5.8867
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do008827.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.3e-091371248
                     HHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 12 lvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     l + v+++Gg+ +W+ +++ ++ gR + +c +rw++yl
       Do008827.1  1 LREQVRLHGGRqNWEGVSAALP-GRNARSCSHRWYNYL 37
                     5788******************.**************7 PP
2Myb_DNA-binding38.82.2e-124890347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     ++  eEde +v   + ++++ W tIa+ ++ gRt++++k+rw+++
       Do008827.1 48 PFNDEEDEVIVSSYRSFPNK-WVTIAKFLP-GRTDNDIKNRWNTV 90
                     6899****************.*********.***********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.018137IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-11153IPR009057Homeodomain-like
CDDcd001672.88E-6137No hitNo description
SMARTSM007177.1139IPR001005SANT/Myb domain
PfamPF002492.8E-7137IPR001005SANT/Myb domain
SuperFamilySSF466893.87E-231799IPR009057Homeodomain-like
PROSITE profilePS5129416.6083895IPR017930Myb domain
SMARTSM007173.4E-114593IPR001005SANT/Myb domain
CDDcd001676.27E-104891No hitNo description
PfamPF002491.0E-94890IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-175492IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
LREQVRLHGG RQNWEGVSAA LPGRNARSCS HRWYNYLAPD VDAGSGRPFN DEEDEVIVSS  60
YRSFPNKWVT IAKFLPGRTD NDIKNRWNTV IRKQLEQDQQ RQQAPPPPRS REDCTLPLFP  120
LVPGDVRITR RGEPVLRRQP PDEAVGEDQS GACLNLFPLA PGDLTKGGSN SDACEAAAMD  180
VDVGDGDLLE KRLWPVSTAT AMEKFKAIVE AVRAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zqc_A2e-22111213120MYB3
3zqc_D2e-22111213120MYB3
3zqc_G2e-22111213120MYB3
3zqc_J2e-22111213120MYB3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo008827.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680813.14e-88transcription factor MYB25-like
TrEMBLA0A1E5WB531e-156A0A1E5WB53_9POAL; Uncharacterized protein (Fragment)
STRINGSi024031m1e-86(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49603465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.19e-25myb domain protein 77