PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do009003.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NF-YB
Protein Properties Length: 274aa    MW: 28815.8 Da    PI: 6.8937
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do009003.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB172.25.7e-5438133297
       NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                 reqdr++Pianv+rim++vlPa+akis+daket+qecvse+isf+t+ea+++cqre+rkti+++d+lwa++ lGf+dy+epl+vyl++yre+ege 
  Do009003.1  38 REQDRLMPIANVIRIMRRVLPAHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSRLGFDDYIEPLSVYLHRYREFEGEA 133
                 89*******************************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.1E-4932134IPR009072Histone-fold
SuperFamilySSF471131.38E-3740136IPR009072Histone-fold
PfamPF008084.5E-2544107IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.2E-167189No hitNo description
PROSITE patternPS0068507490IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.2E-1690108No hitNo description
PRINTSPR006151.2E-16109127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0033613Molecular Functionactivating transcription factor binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MDSSSFLPAS AANGSAAGGG GSNGAGSAQA QHQAPPIREQ DRLMPIANVI RIMRRVLPAH  60
AKISDDAKET IQECVSEYIS FITGEANERC QREQRKTITA EDVLWAMSRL GFDDYIEPLS  120
VYLHRYREFE GEARGVGLAP GPARGGGGGG DHHLHHHSMA PPPMLKSRAP GGAMAPHHHD  180
MQLHASMYGG AVPPPPGHGF VMPHQGGHQY HLPYPYEPAY GGEHAAAMAA YYGGASYAPG  240
NGGSGDGSGS SGGSASHTPH GGSFEHQHPF ASYK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A4e-6236128597NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo009003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9765171e-155EU976517.1 Zea mays clone 896651 nuclear transcription factor Y subunit B-6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953763.11e-116nuclear transcription factor Y subunit B-2
TrEMBLA0A1E5WLW50.0A0A1E5WLW5_9POAL; Nuclear transcription factor Y subunit B-6
STRINGSi020091m1e-115(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.23e-63nuclear factor Y, subunit B6