PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do009031.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 283aa    MW: 30490.1 Da    PI: 8.891
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do009031.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-19105155256
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  y+GVr++  +g+WvAeIr p +   r r++lg+++++e Aa a+++a+ kl+ge
  Do009031.1 105 LYRGVRQRQ-WGKWVAEIRLPQN---RVRVWLGTYDSPETAAHAYDRAAFKLRGE 155
                 59****999.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.10E-29104162No hitNo description
PROSITE profilePS5103223.169105162IPR001471AP2/ERF domain
SMARTSM003802.9E-34105168IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-22105162IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-30105162IPR001471AP2/ERF domain
PfamPF008471.9E-13106155IPR001471AP2/ERF domain
PRINTSPR003672.5E-12106117IPR001471AP2/ERF domain
PRINTSPR003672.5E-12144164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDASLRTLSP ASFPGEVRSA VSSLLLSSPG TSALDTVFSH LPPPVTIPPL GSSVYYRQCE  60
LLRHFAASQQ PQAAAACSSS SSSSSSAMGF QLPPDDAAAM LRQKLYRGVR QRQWGKWVAE  120
IRLPQNRVRV WLGTYDSPET AAHAYDRAAF KLRGEYARLN FPGVMDGQDC PEHLRPLRAA  180
VDAKIQAIRA XLARKRARAR KQREESKETA RGSVDAKPAT TTAAGPVASE GAATTSETTT  240
TSTTPYGSPD GVLSVSAASA DGDCLLERMP SFDPELIWEM LNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-18104162463ATERF1
3gcc_A2e-18104162463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192198ARKRARA
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo009031.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808129.11e-139ethylene-responsive transcription factor ERF061
TrEMBLA0A1E5UM230.0A0A1E5UM23_9POAL; Ethylene-responsive transcription factor ERF060
STRINGPavir.J01332.1.p1e-137(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88282842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.13e-32ERF family protein