PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do009232.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GRAS
Protein Properties Length: 98aa    MW: 10592.8 Da    PI: 11.561
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do009232.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS71.12.1e-22297276373
        GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 +r+s +r+  E++ l++++ n+va eg +r  r+e ++kWr+r+++aG++pv+++e +a+ +++ l +    g+ v+ +sg l  gW++r ++++SaW
  Do009232.1   2 ARDSAQRAXAEEA-LANKAANAVAREGPDRLDRCEVFGKWRSRFGMAGLRPVAIGEAVADRVRARLGHAR-SGFDVKLDSGRLGVGWMGRVVTVASAW 97 
                 6899999999999.99**************************************************9998.99************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098511.782179IPR005202Transcription factor GRAS
PfamPF035147.3E-20297IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MARDSAQRAX AEEALANKAA NAVAREGPDR LDRCEVFGKW RSRFGMAGLR PVAIGEAVAD  60
RVRARLGHAR SGFDVKLDSG RLGVGWMGRV VTVASAWH
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo009232.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9570749e-84EU957074.1 Zea mays clone 1581966 chitin-inducible gibberellin-responsive protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953458.12e-52scarecrow-like protein 8
TrEMBLA0A1E5UIJ86e-61A0A1E5UIJ8_9POAL; Uncharacterized protein
STRINGSi016627m8e-52(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.14e-22SCARECROW-like 8