PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do009234.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

TCP

Protein Properties

Length: 230aa MW: 23405.4 Da PI: 10.3842

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do009234.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	111.8	9.4e-35	60	169	9	89
TCP 9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnsssg................ 88 +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a ++ +++sss ++++++ Do009234.1 60 KDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAVFVsssAPSTSSSHYHHQQQQtvlgkrprdeggdaaa 158 89*******************************************************999994442211222222222222223444445555555555 PP TCP 89 ..........k 89 + Do009234.1 159 aaigtaaaasA 169 55555444440 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	7.3E-31	59	143	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.009	59	113	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MAATRDVSAA AALFHVYQPL PVPSTAAPAA VLAAAAADGA GAMVVPAKAV KKEGGGGGGK 60 DRHSKVNGRG RRVRMPIVCA ARVFQLTREL GLKSDGQTIE WLLRQAEPSI LAATGSGTTP 120 AVFVSSSAPS TSSSHYHHQQ QQTVLGKRPR DEGGDAAAAA IGTAAAASAF WAALPAAPRT 180 TAEAWGFSPL EAQAAAAAAA YVPMAQAHHH HLNLLAALSG AARRAEEETR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00655	PBM	Transfer from LOC_Os02g42380	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do009234.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727699	1e-116	KJ727699.1 Zea mays clone pUT5638 TCP transcription factor (TCP16) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004953208.1	1e-102	transcription factor TCP21-like
Swissprot	Q9FMX2	4e-40	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A1E5VZR8	1e-160	A0A1E5VZR8_9POAL; Transcription factor TCP7
STRING	Sb04g026970.1	4e-88	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	5e-33	TCP family protein