PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do009376.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family M-type_MADS
Protein Properties Length: 663aa    MW: 73481 Da    PI: 8.5085
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do009376.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.72.7e-17416455342
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF   3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 
                 i n+s r  tf kRr+g++KKA+EL +LC+++++v++++ 
  Do009376.1 416 ITNDSTRRATFKKRRKGLMKKASELATLCGVDACVMVYGA 455
                 89************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501818.8351770IPR001810F-box domain
Gene3DG3DSA:3.80.10.102.6E-151853IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF813835.76E-91975IPR001810F-box domain
Gene3DG3DSA:3.80.10.102.6E-15126235IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520471.14E-9144345No hitNo description
Gene3DG3DSA:3.80.10.102.6E-15272353IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM004323.7E-23406465IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.745406454IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.15E-23406491IPR002100Transcription factor, MADS-box
CDDcd002663.11E-31407491No hitNo description
PRINTSPR004044.2E-8408428IPR002100Transcription factor, MADS-box
PfamPF003199.2E-18416454IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-8428443IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MGHARKAKVK HTIDLSSYRI SSLPQEIKAK ILSNLSTDMA VRASILSSDW RNVWTIMPDI  60
FMCDSKFCYV CPISDSSEAF SISGRSKFVT LVDLALSLHK GLLDAFTIYG TQSYHDLFAR  120
WMYMLSTKGP GAIAIKLTYG PHYKIPSSLF SISHLYFLYL KNCSISLPKK FEGFKLLRAL  180
KLKVFSSTDS DISNLISSCP LLDVGRLKYF EGINCLSVQA QTLQILEIEG NFEDLHIDAP  240
NIVNIYLTLA NTEGHQSVPV QGDRRSYLKQ TFGSLTRIKT LGVSGSFLTY LSKGCMLTKV  300
PVVFDHLEIF YLERCLWKWT EVVAACSLFQ NAPLLSELEI WSCPHPEAFT RKGIWDQGET  360
EIQTAKLDHL MMITLNGFMG LDWSASIARL GGIICISAPS SSIPSMARKK VALQWITNDS  420
TRRATFKKRR KGLMKKASEL ATLCGVDACV MVYGAGESQP EVWPEAPGET ARIVRRFKDV  480
PELDQCKKMM DMEGFLRQRV DKLREQLHKA QRENRERETA LLLHDAITGR RPGLVGLSVE  540
EVASLGWMVE NRLHAVRDAI ERLHGNRQGV VPEAAALQLP PQPPSQPLAP AYSTGPGHSE  600
MMMQALYPQG WLMAGGDIGA LSYSGFSGAG TGTSAGGDIT PQFGNMGFGF AWPDAAGQSF  660
PSM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1407429RKKVALQWITNDSTRRATFKKRR
2426430KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo009376.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275261e-142KJ727526.1 Zea mays clone pUT5386 MADS transcription factor (MADS66) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5WBF80.0A0A1E5WBF8_9POAL; Agamous-like MADS-box protein AGL80
STRINGPavir.Aa02000.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-33AGAMOUS-like 80