PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do009463.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

bZIP

Protein Properties

Length: 197aa MW: 21537.7 Da PI: 8.6888

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do009463.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	39.6	1.2e-12	74	126	1	53
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 e++l+r+rrk +NR++ArrsR++K++++eeL+ ++ L ae ++L +l+ l Do009463.1 74 EERLRRQRRKVSNRLSARRSREKKQQRLEELRAAAAGLRAEKQQLEARLQALA 126 789**********************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.0E-8	71	126	No hit	No description
Pfam	PF00170	3.3E-8	74	126	IPR004827	Basic-leucine zipper domain
SMART	SM00338	1.0E-7	74	138	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.829	76	128	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.25E-7	77	127	No hit	No description
CDD	cd14702	3.81E-10	79	127	No hit	No description
PROSITE pattern	PS00036	0	81	96	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MLSAQEALDL DFAAASSGCG MGMDIMTCGF TPWGPESCPT LDQVMASGTR TAAPAVQEEV 60 EEAEAAVAEH EEEEERLRRQ RRKVSNRLSA RRSREKKQQR LEELRAAAAG LRAEKQQLEA 120 RLQALARNGL VARCQNARLH AEAAALERRL RDARRLLALR RLAQQVLPMP PTMMPLQPQA 180 AGVAPSAALP GFASLMT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do009463.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU957676	1e-93	EU957676.1 Zea mays clone 1603335 ocs element-binding factor 1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002466386.1	1e-56	DNA-binding protein EMBP-1
TrEMBL	A0A1E5WDB0	1e-134	A0A1E5WDB0_9POAL; Uncharacterized protein
STRING	Sb01g006850.1	4e-56	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13845	24	29