PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do009544.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 203aa    MW: 21736.5 Da    PI: 10.4393
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do009544.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-19453255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                +y+GVr+++ +g+W+AeIrdp     + +r++lg+f+tae Aa+a++ a+++++g
  Do009544.1  4 HYRGVRRRP-WGKWAAEIRDPA----KaARVWLGTFDTAEAAAAAYDDAALRFKG 53
                7********.**********83....36************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.0E-32362IPR001471AP2/ERF domain
PROSITE profilePS5103225.132461IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-22462IPR016177DNA-binding domain
SMARTSM003809.0E-34467IPR001471AP2/ERF domain
PfamPF008477.9E-13453IPR001471AP2/ERF domain
PRINTSPR003671.3E-11516IPR001471AP2/ERF domain
CDDcd000181.61E-121262No hitNo description
PRINTSPR003671.3E-112743IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MRRHYRGVRR RPWGKWAAEI RDPAKAARVW LGTFDTAEAA AAAYDDAALR FKGAKAKLNF  60
PERVRGRTGQ GTFLVTPGVP QPPPPVSAPL PPSLLPVPTA VAPFPDLMRY AQLLQGANSR  120
NIVVASNADD LAPPAQASSS VQILDFSTQQ LLRGSPTTFG RQSTTSASMS TTTSSSPSMW  180
PHVEARTSGV DEANDESCKA PPD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-25364466ATERF1
3gcc_A4e-25364466ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo009544.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057492e-86AP005749.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0047A17.
GenBankAP0058422e-86AP005842.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0003H22.
GenBankAP0149582e-86AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126102e-86CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBankCT8313302e-86CT831330.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA126O21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012702595.12e-72ethylene-responsive transcription factor ERF110
TrEMBLA0A1E5VGP41e-144A0A1E5VGP4_9POAL; Uncharacterized protein
STRINGSi018024m7e-72(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44473571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.13e-28related to AP2 6l