PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do009587.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family LBD
Protein Properties Length: 231aa    MW: 23805.9 Da    PI: 7.0778
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do009587.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260958.1e-302105199
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C++ Cvl+p +     ++ q++++ +v+k+FG++ ++  l+a+p ++r+++++sl+yeA+ r+ +Pv+Ga+g++++++++l+q++a++
  Do009587.1   2 SCNGCRVLRKGCSDACVLRPSIdwidgAQPQANATVFVAKFFGRAGLVASLAAVPLHHRPALFRSLLYEACGRTINPVSGAIGLMWTGNWDLCQAAADA 100
                 6*********************9999888899*****************************************************************99 PP

      DUF260  95 allke 99 
                 +l++e
  Do009587.1 101 VLRGE 105
                 98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.6161107IPR004883Lateral organ boundaries, LOB
PfamPF031958.6E-242100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDACVLR PSIDWIDGAQ PQANATVFVA KFFGRAGLVA SLAAVPLHHR  60
PALFRSLLYE ACGRTINPVS GAIGLMWTGN WDLCQAAADA VLRGESLRAL STIPAAFTDR  120
DMDGLYGNVG VAASSASPEN SSSAPSKKRR AFNAAAAAAV PNSACQQQPP AGLLQSCELD  180
LCLTPASPMA GGRRGCGGGA SDEYSATTTC EDQGATGDLE ARAPALLNLF N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190198GGRRGCGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo009587.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2880021e-147AK288002.1 Oryza sativa Japonica Group cDNA, clone: J075110B01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982442.11e-129LOB domain-containing protein 37
TrEMBLA0A1E5W0H81e-166A0A1E5W0H8_9POAL; LOB domain-containing protein 37
STRINGSi037275m1e-128(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84503041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.16e-56LOB domain-containing protein 37