PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do009592.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

LBD

Protein Properties

Length: 200aa MW: 20904.8 Da PI: 8.3704

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do009592.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140.8	4.4e-44	31	130	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++C++apyfp +p+kfanvhk+FGasnv+kll+++p ++r da+sslvyeA+ar+rdPvyG+vg i++lqqq+e l+a+lal+++ Do009592.1 31 PCAACKLLRRRCAAGCIFAPYFPPGEPHKFANVHKVFGASNVSKLLQEIPVQHRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQVEALQAQLALAQA 129 7***********************************************************************************************998 PP DUF260 100 e 100 e Do009592.1 130 E 130 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.803	30	131	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-43	31	128	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MRDAVAVAVA VPGVARAGGG GGGGAASASA PCAACKLLRR RCAAGCIFAP YFPPGEPHKF 60 ANVHKVFGAS NVSKLLQEIP VQHRGDAVSS LVYEANARVR DPVYGCVGAI SSLQQQVEAL 120 QAQLALAQAE MVRLKMSNDY IVHRLKASRN GGGGSSYTGS PSSMSSPKTA EPEAHCKATP 180 EMLDMVVDQP VMDDAQFWSY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-50	28	133	8	113	LOB family transfactor Ramosa2.1
5ly0_B	1e-50	28	133	8	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do009592.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT069911	0.0	BT069911.1 Zea mays full-length cDNA clone ZM_BFb0321D10 mRNA, complete cds.
GenBank	KJ727650	0.0	KJ727650.1 Zea mays clone pUT5577 LOB transcription factor (LOB19) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004982247.1	3e-94	LOB domain-containing protein 4
Swissprot	Q8LBW3	2e-57	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A1E5WDF9	1e-144	A0A1E5WDF9_9POAL; LOB domain-containing protein 4
STRING	Pavir.Ia01095.1.p	5e-94	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	8e-37	LOB domain-containing protein 4

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]