PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do009726.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ARR-B
Protein Properties Length: 514aa    MW: 56382.6 Da    PI: 7.7854
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do009726.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like53.74.6e-17177220145
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45 
                 ++r++W+++LH++Fvea+  + G ++A+Pk+ile+m+v+gL++++
  Do009726.1 177 RQRIKWSTQLHDKFVEAIYDI-GMDRAVPKNILEVMNVDGLSRYN 220
                 58*******************.********************997 PP
2Response_reg623e-21121231108
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH.....ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd.....pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                   vl +d +++ + +l+++l++ +y++ +++++++ al++l+e++     +Dl++ D+ +pg+dG++ll++i  e  ++p+iv+++++e+e++++ +k 
    Do009726.1  12 VLAIDGDRTTLFVLKRLLQRCNYNNETTVTEADIALDMLRERKnrddqFDLVISDVVIPGIDGFKLLERISLEM-DIPVIVLSTNDEMETMIKGIKH 107
                   7889999************99999989999999999999777777899**********************8865.9********************* PP

                   TESEEEESS--HHHHH CS
  Response_reg  93 GakdflsKpfdpeelv 108
                   G  ++l+Kp  +e+++
    Do009726.1 108 GSCEYLAKPARMEHVR 123
                   *********8887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.2E-309150No hitNo description
SuperFamilySSF521723.7E-269135IPR011006CheY-like superfamily
SMARTSM004483.7E-2110126IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011034.87411130IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.7E-1812123IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.02E-1913123No hitNo description
SuperFamilySSF466891.54E-8174220IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-15175220IPR009057Homeodomain-like
TIGRFAMsTIGR015577.1E-13178219IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MDVNKFLAGL RVLAIDGDRT TLFVLKRLLQ RCNYNNETTV TEADIALDML RERKNRDDQF  60
DLVISDVVIP GIDGFKLLER ISLEMDIPVI VLSTNDEMET MIKGIKHGSC EYLAKPARME  120
HVRNIWTHVV GKSRNDPRNN ISDEKKGSNN TKKCSKRNKN DGDCAEEDKV ETSTQKRQRI  180
KWSTQLHDKF VEAIYDIGMD RAVPKNILEV MNVDGLSRYN TFQVIYKFCF HSYTLLLLPV  240
QDVSRLIFSG SSCATVSSGG LPSANKCFPS GASSSSSSNI SNGVVFNISR PFSPGTSGSS  300
SASISNDCSP LATSMRFPSS GSCSSYASML PGKMLEANRG IPFDVDSFLE EIAASEMPAP  360
SRHLPLQSPE LVNQHSVHIP SSSTGLFNQV VHSSHLPLQS PESVNRPSIQ IQSSADGLFS  420
QVSRESHLFA ILRNNPSNSE NIGVPSRFPN IGHSAGTSIG SSQGNRARIN RIARFVASSG  480
HAPTFGNEYQ NQMTGLMGRI TPVVGFSEQV VLEN
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo009726.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021305586.11e-139two-component response regulator ORR24
TrEMBLA0A1E5WLG70.0A0A1E5WLG7_9POAL; Two-component response regulator ORR24
STRINGSi007844m1e-141(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5050522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.16e-59response regulator 10