PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do009902.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

NAC

Protein Properties

Length: 456aa MW: 50188.3 Da PI: 6.7037

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do009902.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	106.2	4e-33	66	222	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk........lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra............ 77 lp+G++F+Ptd+el+ e+L++kv+ + ++++ +i+ +i++++P++Lp ++++ + +fF++ +k+y+tg+rk+r+ Do009902.1 66 LPAGVKFDPTDQELI-EHLQAKVRPGStaapshplIDEFIpTIEGEdGICYTHPEKLP-GLTKDGLSRHFFHRPSKAYTTGTRKRRKiqppaadassss 162 799**********.99*9998676665543333333776646******.455566799**************88******* PP NAM 78 ........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++ +W++tgk+++v++ g++ g+kk+Lv+y g+++++ekt+Wvmh+y+l Do009902.1 163 apaaqqqqRSETRWHKTGKTRPVVV-AGRQRGCKKILVLYtnFGKHRRPEKTNWVMHQYHL 222 9998755789*********.9999******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.01E-36	60	241	IPR003441	NAC domain
PROSITE profile	PS51005	30.399	66	241	IPR003441	NAC domain
Pfam	PF02365	3.3E-15	67	222	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence Send to blast
MGSWQQEELQ ATAMDGAAAA ATGSSGGSGH PLIGLRIEEY GKYMSDSTCC PQCGHKIDRK 60 LDWVGLPAGV KFDPTDQELI EHLQAKVRPG STAAPSHPLI DEFIPTIEGE DGICYTHPEK 120 LPGLTKDGLS RHFFHRPSKA YTTGTRKRRK IQPPAADASS SSAPAAQQQQ RSETRWHKTG 180 KTRPVVVAGR QRGCKKILVL YTNFGKHRRP EKTNWVMHQY HLGDNEEERE GELVVSKIFY 240 QTQPRQCSVA AEPAAASSDT VDGAADPAAE AAVAPPEVRG AFHGAAAIDE FNFAQFRSSF 300 EEVDVGTSVQ VSARADEEVP TGHLHLHQEH DLHRHQYTNQ EQQRMAAAAA AAFQISTPTE 360 PITSSPMVHH GSVILQQPLE SYDHAASYRH HQQVDEQSHQ PRNFDGRSTS GLEEVIMGCT 420 SRRSRRGEAS GSGGNKESSD WQYPSFWPSD SQDHHR

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence Send to blast

MGSWQQEELQ ATAMDGAAAA ATGSSGGSGH PLIGLRIEEY GKYMSDSTCC PQCGHKIDRK  60
LDWVGLPAGV KFDPTDQELI EHLQAKVRPG STAAPSHPLI DEFIPTIEGE DGICYTHPEK  120
LPGLTKDGLS RHFFHRPSKA YTTGTRKRRK IQPPAADASS SSAPAAQQQQ RSETRWHKTG  180
KTRPVVVAGR QRGCKKILVL YTNFGKHRRP EKTNWVMHQY HLGDNEEERE GELVVSKIFY  240
QTQPRQCSVA AEPAAASSDT VDGAADPAAE AAVAPPEVRG AFHGAAAIDE FNFAQFRSSF  300
EEVDVGTSVQ VSARADEEVP TGHLHLHQEH DLHRHQYTNQ EQQRMAAAAA AAFQISTPTE  360
PITSSPMVHH GSVILQQPLE SYDHAASYRH HQQVDEQSHQ PRNFDGRSTS GLEEVIMGCT  420
SRRSRRGEAS GSGGNKESSD WQYPSFWPSD SQDHHR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do009902.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU969775	0.0	EU969775.1 Zea mays clone 335447 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004966092.1	0.0	uncharacterized protein LOC101753253
Swissprot	Q9M0F8	1e-107	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A1E5VX01	0.0	A0A1E5VX01_9POAL; NAC domain-containing protein 73
STRING	Si006435m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1453	38	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-105	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]