PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do009940.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 232aa    MW: 24913.5 Da    PI: 10.7803
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do009940.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.3e-1965114255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                 +++GVr+++ +grW+AeIr p     +  +r++lg+f taeeAa+a++ a  +l+g
  Do009940.1  65 RFRGVRRRP-WGRWAAEIRNP-----HdsRRVWLGTFNTAEEAAAAYDVANIRLRG 114
                 69*******.**********8.....446*********************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.50E-2965122No hitNo description
PROSITE profilePS5103223.98665122IPR001471AP2/ERF domain
PfamPF008471.4E-1365114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-2965123IPR001471AP2/ERF domain
SMARTSM003802.4E-3265128IPR001471AP2/ERF domain
PRINTSPR003679.9E-116677IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2266122IPR016177DNA-binding domain
PRINTSPR003679.9E-1188104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MTASEPPPPR ARVVRILVHD ADATDSSSSE DEAPPPPRRR ARGVSSSVGA KRRVMEAAGA  60
NPPVRFRGVR RRPWGRWAAE IRNPHDSRRV WLGTFNTAEE AAAAYDVANI RLRGVSARTN  120
FPSARYSPPP PPEPAKPIIS LTLGPGKVIA QESAITLPPV SVKPTVPLQV KEEDGCCDGQ  180
VERGGLEVKA FVPKPMWEMI PGKRKKRSGC GNGTSLRAIH AASVCVEEVG GA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-1766122663ATERF1
3gcc_A5e-1766122663ATERF1
5wx9_A7e-17651221472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo009940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981291.11e-117ethylene-responsive transcription factor CRF1
SwissprotQ9SUE33e-28CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A1E5W6D91e-164A0A1E5W6D9_9POAL; Uncharacterized protein
STRINGSi037209m1e-116(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115732835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G36060.13e-10ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]