PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do010007.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 218aa    MW: 23163.1 Da    PI: 8.309
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do010007.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.83.9e-133076354
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                r+h+e+Er+RR+riN  +++Lr+llP a      +++Ka+ L ++v+++++L
  Do010007.1 30 RSHSEAERKRRQRINAHLATLRTLLPAA-----SRMDKAALLGEVVRHVREL 76
                68*************************9.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.4912776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-133082IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.93E-113077No hitNo description
Gene3DG3DSA:4.10.280.103.7E-143079IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-113076IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-123382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.2E-4128171No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MVPVGSDEAE AAMDGECSPP AATTRSGPSR SHSEAERKRR QRINAHLATL RTLLPAASRM  60
DKAALLGEVV RHVRELRGEA DAAAAGAAVA VPGEGDEVGV EEGQHCCCHG TGERERAAAT  120
TRRVRAWVCC ADRPGLMSEL GRAVRSVSAR AVRAEIATVG GRTRSVLELD FGGQHDGEGT  180
SPRPALQAAL RAVLLSREEL LAAECYKRQR FSAHLARV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13540ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo010007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9691020.0EU969102.1 Zea mays clone 326075 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799424.11e-121transcription factor bHLH30-like
TrEMBLA0A1E5W6B91e-150A0A1E5W6B9_9POAL; Uncharacterized protein
STRINGSi033077m1e-120(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.12e-18bHLH family protein