PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do010286.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family AP2
Protein Properties Length: 415aa    MW: 42964.4 Da    PI: 10.0379
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do010286.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.9e-203283156
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                ++y+GVr ++ +gr++AeIrdp    k+ r++lg+++taeeAa+a++ a+++++g+
  Do010286.1 32 PHYRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTYDTAEEAARAYDVAAREFRGA 83
                68********.**********83...36*************************985 PP
2AP260.53.8e-19273323256
         AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+ eAa a+++a++ l+g+
  Do010286.1 273 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPVEAALAYDRAARTLRGA 323
                 69*******.**********883....5*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.55E-293290No hitNo description
PfamPF008479.2E-143282IPR001471AP2/ERF domain
SMARTSM003808.5E-373396IPR001471AP2/ERF domain
PROSITE profilePS5103224.5133390IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-323390IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-223391IPR016177DNA-binding domain
PRINTSPR003678.1E-113445IPR001471AP2/ERF domain
PRINTSPR003678.1E-115672IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-21273331IPR016177DNA-binding domain
SMARTSM003807.4E-34273336IPR001471AP2/ERF domain
PfamPF008474.1E-12273322IPR001471AP2/ERF domain
CDDcd000181.04E-27273332No hitNo description
Gene3DG3DSA:3.30.730.105.4E-31273332IPR001471AP2/ERF domain
PROSITE profilePS5103221.944273330IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016020Cellular Componentmembrane
GO:0016604Cellular Componentnuclear body
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MAPRAADKEP VPPATGLGLG VGGGVGAVGL GPHYRGVRKR PWGRYAAEIR DPAKKSRVWL  60
GTYDTAEEAA RAYDVAAREF RGAKAKTNFP FASQCPVAAG AGSPISSNST VDSSGGGSGC  120
GAPMQAMPLP PALDLDLFNR AAAVTAVSAG GMRFPFKGYP VARPTPHPYF FYEQAAAAAA  180
AAAAAGYRML KVAPAPVTVA AVAQSDSDSS SVVDHTPSPP ATKHRGRCRS QQTLTSQLLL  240
CRMDPTLRAV FSHGGAGGGG GGGGGGTGGS DGHYRGVRKR PWGRYAAEIR DPWKKTRVWL  300
GTFDTPVEAA LAYDRAARTL RGAKAKTNFP DHAGGHHQLH LAPLQPPAVP YGGASFDCPS  360
RWHVVYLQQP PAAEAALPPA ATQPADSSTL STALELGTGQ RRGALPFDLN EAPSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2031330364ATERF1
3gcc_A1e-2031330364ATERF1
5wx9_A5e-2023330472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo010286.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970251.11e-100ethylene-responsive transcription factor 4
SwissprotQ9LW492e-32ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLA0A1E5VL190.0A0A1E5VL19_9POAL; Ethylene-responsive transcription factor 12
STRINGSi002729m1e-100(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38463174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.14e-31ERF domain protein 12