PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do010517.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family FAR1
Protein Properties Length: 407aa    MW: 44180.2 Da    PI: 9.043
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do010517.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.11.2e-17109192190
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 +fY++YA++vGF v++++s+ s ++g++   +++C k g+++ e k      r+ra++ t+C ak++vk++ d+  +v+   l+HnH+++
  Do010517.1 109 RFYRKYARRVGFGVSVRRSSFS-QEGTCLYLELMCCKGGRPRYEPKF-----RKRASSTTNCPAKIRVKLWGDKLLHVELAILDHNHPVS 192
                 5*****************9999.6677****************9988.....99*********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.4E-16109193IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MSHVEATSML EELAREATID DVLVDGNGAE LHGNGAVLKS VEVSQDLGGI SAKEVPLHEG  60
KEVILVDDND SGQEDGGKAK DPSIEESDGE DIGVPEVGMV FNNHTEVNRF YRKYARRVGF  120
GVSVRRSSFS QEGTCLYLEL MCCKGGRPRY EPKFRKRASS TTNCPAKIRV KLWGDKLLHV  180
ELAILDHNHP VSPAMARFLN SYKQLSGPAK RRLRMGGPGA MPVEEPILSD KYRLALRLVR  240
EMEKFLLNSN THDDTQPRIK SRVPKVNKPN TVTGQNVADA ATDNGNGGPK GPEAPAVIQA  300
SQIQKVGAER GIVPSGYIGV PANVQQFVAN QAAIRPSIVY MVPSAVDPHA FGNGVLMPVM  360
YQQMFQVPQK PNGTVQETVN GKKKRPRGQK LTETSQLSNG IPGPSSG
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo010517.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0048811e-143AP004881.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0496E03.
GenBankAP0064381e-143AP006438.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0030C08.
GenBankAP0149581e-143AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-143CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964403.11e-110protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A1D6HCR10.0A0A1D6HCR1_MAIZE; Protein FAR1-RELATED SEQUENCE 6
STRINGSi005823m1e-108(Setaria italica)