PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do010559.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 199aa    MW: 20501 Da    PI: 8.6148
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do010559.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000195173123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++Cp Cgk F +   L  H  +H
  Do010559.1 51 FRCPLCGKAFASYQALGGHKASH 73
                89**********99998888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.6E-125075IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.5965178IPR007087Zinc finger, C2H2
SuperFamilySSF576672.23E-75173No hitNo description
SMARTSM003550.0115173IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
SuperFamilySSF576672.23E-7103130No hitNo description
PfamPF139121.4E-7107130IPR007087Zinc finger, C2H2
PROSITE profilePS501579.743108135IPR007087Zinc finger, C2H2
SMARTSM003554.7108130IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MDQDEYLSLC LMALAAACQQ QAGGATAAHQ PHDVAATSSA TASTTELPLH FRCPLCGKAF  60
ASYQALGGHK ASHRKAPAAY GGTVPLFHQK EAAEASASGR SGGGTGRHVC TVCRRGFDTG  120
QALGGHKRFH YLHGPSVSAS LPSAAGPSAG VGGFDLNLAP VVALEIGFPG VRRRGEDEEE  180
VLSPLPFTAK KPRRPSNSA
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo010559.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958186.23e-87zinc finger protein 1
TrEMBLA0A1E5UZS11e-141A0A1E5UZS1_9POAL; Uncharacterized protein
STRINGSi032711m1e-86(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP148981718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04340.13e-17zinc finger of Arabidopsis thaliana 6