PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do010611.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 247aa    MW: 26568.8 Da    PI: 8.2659
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do010611.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61.1e-08166206954
                 HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Do010611.1 166 ARMRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 206
                 699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.085157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-12162216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-14162218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-13163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-6166206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.90E-6180211No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MDFDMLNSHP EAQLELMNAM LQLEQLTAFP DHGATMMVPS TPPSPPCMQQ QAAHHFSSVP  60
HHMSAGGANG RATYHQDHQQ YSTVVTAASS CNGSARSEYY VAQDNAAGDG GSGGEGSATT  120
AAGSSAMREM IFRVAALQPV NIDPEMVRPP KRRNVRISTD PQSVAARMRR ERISERIRIL  180
QRLVPGGTKM DTASMLDEAI HYVKFLKTQV QSLERAAAAS GRRPAAPPAD NNGGAAPYPG  240
GRMNGQW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147152RPPKRR
2166171RMRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo010611.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269731e-151KJ726973.1 Zea mays clone pUT3674 bHLH transcription factor (bHLH113) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683432.11e-126transcription factor HEC1
TrEMBLA0A1E5W7V90.0A0A1E5W7V9_9POAL; Transcription factor HEC1
STRINGSi015349m1e-126(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.12e-37bHLH family protein