PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do010705.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MIKC_MADS
Protein Properties Length: 218aa    MW: 24956.5 Da    PI: 8.1854
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do010705.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.21.9e-271059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                ri+n++ rqvtfskRrngi+KKA EL +LCdaev +iifsst +lyey+s
  Do010705.1 10 RIDNSTSRQVTFSKRRNGIFKKARELAILCDAEVGLIIFSSTSRLYEYAS 59
                8***********************************************86 PP
2K-box62.91.3e-21851483598
       K-box  35 qRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                   +l+G+dL+ L +keLq+Le+qLe sl+ iR+kK++ll+++i+el +k   +q++n++L +k+
  Do010705.1  85 ELKLMGQDLSGLGVKELQNLENQLEMSLRCIRTKKDQLLVDEIHELNRKGSLIQQDNMELYRKV 148
                 479**********************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.6E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.342161IPR002100Transcription factor, MADS-box
CDDcd002653.79E-44277No hitNo description
SuperFamilySSF554551.57E-32285IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003198.9E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.72855154IPR002487Transcription factor, K-box
PfamPF014862.2E-1987148IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGIFK KARELAILCD AEVGLIIFSS TSRLYEYAST  60
SMKSVIDRYS RAKEEQQLVA NPDIELKLMG QDLSGLGVKE LQNLENQLEM SLRCIRTKKD  120
QLLVDEIHEL NRKGSLIQQD NMELYRKVNL IRQENVELYK KLYEKEAAGE VNRDSTTPNN  180
FAVVENANIP FHLELNTPPQ ENDVEQPAPP KLGLQLNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-23184184MEF2C
5f28_B7e-23184184MEF2C
5f28_C7e-23184184MEF2C
5f28_D7e-23184184MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo010705.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283382e-77KJ728338.1 Zea mays clone pUT6619 MADS transcription factor (MADS63) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021319518.11e-138MADS-box transcription factor 27 isoform X1
SwissprotQ6EP491e-119MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A1E5VYR41e-158A0A1E5VYR4_9POAL; MADS-box transcription factor 27
STRINGPavir.Ga01454.1.p1e-140(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.16e-79AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]