PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do010826.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

FAR1

Protein Properties

Length: 256aa MW: 28225.8 Da PI: 9.9163

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do010826.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67	4.8e-21	13	98	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY+ Y+ +vGF+vrk++ ++sk++geit+r+f Cs+eg+r+++++k + +r gC+a+l v++ k +k ev+ ++ HnH l+ Do010826.1 13 EFYRYYGWKVGFNVRKEYANRSKKTGEITSRKFACSREGRRASHTSK-----ALVPDSRSGCNAHLIVRRPKaGAKLEVYAFQPRHNHLLF 98 6**************************************998777.....89999*********99999***********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-17	13	98	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MGLEFGSEQE AYEFYRYYGW KVGFNVRKEY ANRSKKTGEI TSRKFACSRE GRRASHTSKA 60 LVPDSRSGCN AHLIVRRPKA GAKLEVYAFQ PRHNHLLFAP SFTPCPFLGT AATPDAGSLP 120 DGTESENFLE KSSNARAKES KKGQKNKTQP RNCIEKGLRK KQKVLSEPPS VMYSLSDASA 180 RSENAMFQGL KAPSNMVLVG SQVPAYNASR GVDLSNPMEP INYEGIHPGL SPNFTPELGF 240 VTYHPSLASS DSPQNQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do010826.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK072998	1e-38	AK072998.1 Oryza sativa Japonica Group cDNA clone:J023143C23, full insert sequence.
GenBank	AL662944	1e-38	AL662944.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0028I23, complete sequence.
GenBank	AP014960	1e-38	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CP012612	1e-38	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBank	CR855155	1e-38	CR855155.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0525E10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022684126.1	2e-66	protein FAR1-RELATED SEQUENCE 7 isoform X2
TrEMBL	A0A1E5VTY1	0.0	A0A1E5VTY1_9POAL; Uncharacterized protein (Fragment)
STRING	OGLUM04G12170.1	7e-98	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15895	9	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18960.1	2e-14	FAR1-related sequence 12