PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do010905.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 208aa    MW: 23649.2 Da    PI: 6.2576
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do010905.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY28.43.3e-0937802059
                S-EEEEEE-ST...T---EEEEEE.-SSSTTEEEEEEES--SS- CS
        WRKY 20 fprsYYrCtsa...gCpvkkkver.saedpkvveitYegeHnhe 59
                 +r Y+rC+++   +Cp+ k v++ s++dp ++e+tY  eH+++
  Do010905.1 37 KTRLYFRCSYRedrHCPASKLVQQvSHHDPPLFEVTYMHEHTCN 80
                6899******99999*******974678**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007748.1E-73381IPR003657WRKY domain
SuperFamilySSF1182902.35E-93681IPR003657WRKY domain
PfamPF031061.2E-103779IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.4E-103780IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MASPRLKRKQ QPSQPYGQGG LFGLSPPLEP APRHGRKTRL YFRCSYREDR HCPASKLVQQ  60
VSHHDPPLFE VTYMHEHTCN AAPVPTPDVM VQNEAPAPNG GLVLWFGSSS GGHHHRDVRM  120
QLQGEQQQQQ YHHSPSPLLM TNFDYSNNSQ QHAFPSRVPP FPIIESSSPT PQWTDDDDDI  180
LTWDWDSFTC DLDDHLQFSD DGVHFPGM
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo010905.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978045.18e-77probable WRKY transcription factor 48
TrEMBLA0A1E5W4A41e-153A0A1E5W4A4_9POAL; Uncharacterized protein
STRINGSi012735m5e-76(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115292433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.14e-09WRKY DNA-binding protein 46