PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do010927.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ARF
Protein Properties Length: 739aa    MW: 80791.6 Da    PI: 7.4778
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do010927.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.91.1e-24167268199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   + +++el+
  Do010927.1 167 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLHGTEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGDDGELR 262
                 99****************************963.3445679************************************************..3489999* PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 ++v+r+
  Do010927.1 263 LGVRRA 268
                 **9996 PP
2Auxin_resp110.51.7e-36293373182
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                 +aha++tksvF+++YnPr s+seF+++++k++k++++++s+G Rfkm++e++d+ err++G+++g+ d+dp  W++SkW++L
  Do010927.1 293 VAHAVATKSVFHIYYNPRLSQSEFIIPYSKFMKSFSQPFSAGLRFKMRYESDDATERRYTGIIAGIGDADP-MWRGSKWKCL 373
                 79*********************************************************************.9********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.83E-43159282IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.8E-41160270IPR015300DNA-binding pseudobarrel domain
CDDcd100175.76E-23165267No hitNo description
PROSITE profilePS5086313.493167269IPR003340B3 DNA binding domain
PfamPF023621.4E-22167268IPR003340B3 DNA binding domain
SMARTSM010195.3E-23167269IPR003340B3 DNA binding domain
PfamPF065077.5E-31293373IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    Send to blast
MAGIDLNDTV EEDEEEAEAG NTCSQQSRTS SAATTGTPPP QPRPGAAVCL ELWHACAGPV  60
APLPRKGSVV VYLPQGHLEH LGDAAAAAAG AGSMPPSGVT PHVFCRVVDV TLHADASTEE  120
VYAQLALVAE NEEVARRLRG GSEDGSGGDG EDGDTVKQRF SRMPHMFCKT LTASDTSTHG  180
GFSVPRRAAE DCFPPLDYSQ QRPSQELVAK DLHGTEWRFR HIYRGQPRRH LLTTGWSAFV  240
NKKKLVSGDA VLFLRGDDGE LRLGVRRAAQ LKNGSAFPAL YNQCSNLGSL ANVAHAVATK  300
SVFHIYYNPR LSQSEFIIPY SKFMKSFSQP FSAGLRFKMR YESDDATERR YTGIIAGIGD  360
ADPMWRGSKW KCLMVRWDDD VDFRRPNRIS PWEIELTSSV SGSHLSAPNA KRLKPCLSHV  420
NPDYLIPNGS GRPDFGESAQ FHKVLQGQEL LGYRTRDNAA VTTSQPCEAR NMQYIDERSC  480
SNDGSNNIPG VPRLGVRTPL GNPGFSYHCS GFGESQRFQK VLQGQEVFRP YRGTLVDACL  540
RNNAFQQQDG SHAPSVVNKW HTQLHGCAFR GPPAPMLPSQ SSSPPSVLMF QRGNTKMSQF  600
EFGHDSLDKN EDDTPAMFGH AGGIGGAEQT LMLQPHHVSG EVRNRHMTVE KFHSGVAVGK  660
DGHENREVDT NSCKIFGISL TQKVPASKGK DCGDANYPSP FLSLKQQVPK SLGNSCATVH  720
EQRPVVGRVI DVSTMDMMI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1134740318361Auxin response factor 1
4ldw_A1e-1134740318361Auxin response factor 1
4ldw_B1e-1134740318361Auxin response factor 1
4ldx_A1e-1134740318361Auxin response factor 1
4ldx_B1e-1134740318361Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00021PBMTransfer from AT2G33860Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo010927.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807170.10.0auxin response factor 15-like
SwissprotQ8S9850.0ARFO_ORYSJ; Auxin response factor 15
TrEMBLA0A1E5W0030.0A0A1E5W003_9POAL; Auxin response factor
STRINGPavir.J08401.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25373580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-164ARF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]