PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do011037.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family M-type_MADS
Protein Properties Length: 490aa    MW: 54467.9 Da    PI: 8.6772
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do011037.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.34.2e-283584251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                rie+++ rqvtfskRr g+lKKA+ELSvLCdaeva+i+fs++g+ly ++s
  Do011037.1 35 RIEDTTSRQVTFSKRRSGLLKKAYELSVLCDAEVALIVFSPRGRLYQFAS 84
                8***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.1E-342585IPR002100Transcription factor, MADS-box
CDDcd002654.93E-3826101No hitNo description
PRINTSPR004041.3E-262848IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.8472986IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-2829108IPR002100Transcription factor, MADS-box
PfamPF003191.4E-263582IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-264863IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-266384IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MVAMAPPPPD GNGQQIVPAD ATRKKGRCGR REMRRIEDTT SRQVTFSKRR SGLLKKAYEL  60
SVLCDAEVAL IVFSPRGRLY QFASATDLQN TINRYLNHTK GTTTNEKVVE PGVEKWKYEA  120
KTLGQKIDAI EAYKRPLPLI LNSNVLLSMA DAEQQKKLMD QILELREKER KLLKENAMLR  180
YQQCKALPLL ELNDKGCRMD EDAAGGGGGG EEEADDAGRM EDVETELAIG IGRRRASSSS  240
AEPQHGTMSQ RMTTSKQLMS STPLVMDKAN MSNQAGKVLK KGKKKQAKDE LDRQKQTEKK  300
RRRLEKALAN SAAIISELEK KKQKKKEEQQ RLDEEGAAIA EAVALHVLID EDSDEPCHLM  360
LNKHRRCNHW DPSAGFEFTV DAQATDIYPS DGLICASHAY APKGRWADWG IGQPLPSWGE  420
VRDLQGPYYQ GTFHESVNCP GFIAAQAVSS LQIREDSSEI TSPSQGAAAA ATVVNRMLGG  480
TNRLNLYREI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A1e-1629110185Myocyte-specific enhancer factor 2A
3kov_B1e-1629110185Myocyte-specific enhancer factor 2A
3kov_I1e-1629110185Myocyte-specific enhancer factor 2A
3kov_J1e-1629110185Myocyte-specific enhancer factor 2A
3p57_A1e-1629110185Myocyte-specific enhancer factor 2A
3p57_B1e-1629110185Myocyte-specific enhancer factor 2A
3p57_C1e-1629110185Myocyte-specific enhancer factor 2A
3p57_D1e-1629110185Myocyte-specific enhancer factor 2A
3p57_I1e-1629110185Myocyte-specific enhancer factor 2A
3p57_J1e-1629110185Myocyte-specific enhancer factor 2A
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164169LREKER
2282302KKKQAKDELDRQKQTEKKRRR
3299303KRRRL
4300323RRRLEKALANSAAIISELEKKKQK
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo011037.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0931810.0FP093181.1 Phyllostachys edulis cDNA clone: bphylf024h24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5VTG70.0A0A1E5VTG7_9POAL; MADS-box protein SOC1
STRINGSi019985m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38051616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.12e-39AGAMOUS-like 20