PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do011051.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 196aa    MW: 21133.2 Da    PI: 8.926
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do011051.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.00173759123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C+ C++ F++   L  H  +H
  Do011051.1 37 FECKTCSRQFPTFQALGGHRASH 59
                89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.44E-83559No hitNo description
PfamPF139121.4E-123661IPR007087Zinc finger, C2H2
SMARTSM003550.383759IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.7233764IPR007087Zinc finger, C2H2
PROSITE patternPS0002803959IPR007087Zinc finger, C2H2
SuperFamilySSF576672.44E-8104131No hitNo description
PfamPF139122.4E-10108134IPR007087Zinc finger, C2H2
PROSITE profilePS501579.889109136IPR007087Zinc finger, C2H2
SMARTSM003550.25109131IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MLLAQAQHQQ RLLQQVGGHG HGAPFPSSRR GAHGRVFECK TCSRQFPTFQ ALGGHRASHK  60
RPRLLQPQQQ QQGPADHADA ELCLGRQPLL LAPHQPQPQP QQPAKPRVHE CPVCGLEFAI  120
GQALGGHMRR HRAEADAEAH NKARPPPEKA CDVAGGICLD LNLTPSENCA KCRSVVVLGA  180
AGQGVHKTLA MLDCSL
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo011051.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2442414e-41DQ244241.1 Zea mays clone 3770 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818717.11e-86zinc finger protein ZAT12-like
TrEMBLA0A1E5ULE01e-136A0A1E5ULE0_9POAL; Uncharacterized protein
STRINGPavir.J34723.1.p9e-84(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62822138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.11e-20C2H2 family protein