PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do011140.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 517aa    MW: 56641.9 Da    PI: 5.0676
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do011140.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.52.8e-4991361128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                 lppGf F P+d elv +yLk+k+ g+k+e  + i+evdiyk+ePwdLp+  ++  e+++w+fF++rd+ky+tg+r+nrat +gyWk+tgkd++++  ++
  Do011140.1   9 LPPGFGFYPSDTELVGHYLKRKILGQKIEH-DLIPEVDIYKHEPWDLPAkcNFPIEDNKWHFFASRDRKYPTGSRSNRATVAGYWKSTGKDRSIKL-NK 105
                 79**************************99.99***************6245555999**************************************.99 PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                 ++ g+kktLvf++gr p+g++t+W+mhey +
  Do011140.1 106 RTLGTKKTLVFHEGRPPSGRRTEWIMHEYYI 136
                 9****************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-573159IPR003441NAC domain
PROSITE profilePS5100555.039159IPR003441NAC domain
PfamPF023656.6E-2410135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MEALRSMNLP PGFGFYPSDT ELVGHYLKRK ILGQKIEHDL IPEVDIYKHE PWDLPAKCNF  60
PIEDNKWHFF ASRDRKYPTG SRSNRATVAG YWKSTGKDRS IKLNKRTLGT KKTLVFHEGR  120
PPSGRRTEWI MHEYYIDEKE CQVSPDMKDA FVLCRVTKRN DWALENDNEV DNRNPHPQQL  180
NDAATSVVSA VKPEDAATSV VSAVKPEDAA ASVICAEEPN HVATPVGSAE LSNDVSIAAI  240
AADTASPNGS NELEAWLEEL LDPSPSFNPV ADAGSANPSS VVPKIGPDHA SPIKDGTDAT  300
DYLFTDDLPD DLYSMLYPGN DDFSNSIFME SAGQAEAFAT NQTYCLMEGS TFALPNNSED  360
GTPKDELQLD QENNNPNLSN GNIDSGIIRR TRATASTANI SPAGYRIKMQ VGIKKMVASN  420
TESINQTMRF ADNSGRRLDL ITNAEHQKEH ANNATSVKQS GAAKPSEAHS NQGDLRGTIN  480
AFRFSSAGFN IYMLFAIFVV GIAVSVALHY NHLGASL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-46616212172Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo011140.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967788.10.0NAC domain-containing protein 74
SwissprotQ7GCL71e-161NAC74_ORYSJ; NAC domain-containing protein 74
TrEMBLA0A1E5W8C00.0A0A1E5W8C0_9POAL; NAC domain-containing protein 74
STRINGSi001021m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75603847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.16e-65NAC domain containing protein 57
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]