PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do011217.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family E2F/DP
Protein Properties Length: 485aa    MW: 53159 Da    PI: 8.5545
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do011217.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP72.16.2e-2377142171
     E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                 rk+ksL+ll+++f++l+ + + +++ l+++ak+L    v  +rRRiYDi+NVLe+++++ +++kn+++w g
  Do011217.1  77 RKQKSLGLLCSNFVALYDRDDVETIGLDDAAKRL---GV--ERRRIYDIVNVLESVGILVRRAKNRYTWLG 142
                 79****************9999************...**..****************************87 PP
2E2F_TDP79.14.1e-25254334171
     E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                 rkeksL+lltq+f+kl+ + e ++v+l+e+a+ L+ e     ++++k+RR+YDi+NVL++lnliek     ++k+++rw g
  Do011217.1 254 RKEKSLGLLTQNFVKLFLTMEVETVSLDEAARLLLGEghaesNMRTKVRRLYDIANVLSSLNLIEKtqqadTRKPAFRWLG 334
                 79******************************************************************9999*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.9E-2573143IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.53E-1676141IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.3E-2877142IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023196.7E-2178142IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.1E-23251335IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.3E-32254334IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.6E-20255334IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.9E-12256334IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MDAASAAAAA ARAPAMAAAS AAAAGPSSSS GAEPSVADVQ PPAVAPRVLL QAPVQVGAGS  60
GSGSGVARGC RHHAYSRKQK SLGLLCSNFV ALYDRDDVET IGLDDAAKRL GVERRRIYDI  120
VNVLESVGIL VRRAKNRYTW LGFGGVPAAM KELKERALRE MSGSPVLPPM EESSTANVRF  180
LLLDLVGFGH GSSYLLLTLP YSLCFVVAKL SDDEDDEKLG DADEDAESEK LSQSIDNTSD  240
KPDAPSCRLR NDHRKEKSLG LLTQNFVKLF LTMEVETVSL DEAARLLLGE GHAESNMRTK  300
VRRLYDIANV LSSLNLIEKT QQADTRKPAF RWLGQAKRKQ ENSVTVALPA ARPNKRAFGT  360
DLTNVDNKRG RLNSTTENKA KLMQGAGNIV KTFERQLGQG NRSDFVYGPF HPAVAKKQET  420
DDQTVKQKER KTIQDWENLA VSFRPQYQNQ GFVLFDSHFG ALNDLFGHYV EAWKSWYLDL  480
TRETS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A4e-16763263228Transcription factor E2F8
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00397DAPTransfer from AT3G48160Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo011217.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9645350.0EU964535.1 Zea mays clone 279700 mRNA sequence.
GenBankKJ7280270.0KJ728027.1 Zea mays clone pUT6165 E2F-DP transcription factor (E2F12) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002436789.10.0E2F transcription factor-like E2FE isoform X2
TrEMBLA0A1E5VTK00.0A0A1E5VTK0_9POAL; E2F transcription factor-like E2FF
STRINGSb10g008800.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01330.12e-78DP-E2F-like protein 3