PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do011293.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 183aa    MW: 19511.4 Da    PI: 4.7793
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do011293.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.74.5e-163685255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 y GVr+++ +gr++AeIr p++   + r++lg+f+taeeAa a++  + ++ g
  Do011293.1 36 EYLGVRRRP-WGRFAAEIRNPVT---KERHWLGTFDTAEEAAVAYDLSAISISG 85
                588******.**********654...5*******************99988766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.29E-183594IPR016177DNA-binding domain
SMARTSM003803.6E-2636100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.9E-263693IPR001471AP2/ERF domain
PROSITE profilePS5103220.6663694IPR001471AP2/ERF domain
PfamPF008475.3E-93782IPR001471AP2/ERF domain
CDDcd000181.16E-223793No hitNo description
PRINTSPR003679.3E-93748IPR001471AP2/ERF domain
PRINTSPR003679.3E-95975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MADAPVAHQA VAAAMGGQDL HQQLQQRRRR SRASSEYLGV RRRPWGRFAA EIRNPVTKER  60
HWLGTFDTAE EAAVAYDLSA ISISGPAAAR TNFYYPSGAG AATTLQQQQP YGPVPVAPPP  120
SPLSEGSVSG SGSTVDDYEC QQLSAEEADA DADDDESLTI AAILQSFRHQ NAPSAPSASL  180
YLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-15351001380Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo011293.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2417623e-82AK241762.1 Oryza sativa Japonica Group cDNA, clone: J065205D04, full insert sequence.
GenBankAP0051643e-82AP005164.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0054L03.
GenBankAP0149643e-82AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126163e-82CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683340.15e-75ethylene-responsive transcription factor LEP
TrEMBLA0A1E5W2U21e-129A0A1E5W2U2_9POAL; Uncharacterized protein
STRINGSi015237m5e-80(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.13e-29ERF family protein