PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do011296.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 93aa    MW: 10115.5 Da    PI: 11.9721
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do011296.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.68.2e-152063350
         AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaar 50
                 kGVr+++ +g+W+AeIrdp     +  r++ g+f + e Aa a++  +
  Do011296.1 20 NKGVRRRP-WGKWAAEIRDPI----KgVRVWPGTFPSDEAAALAYDPTA 63
                59******.**********72....46**********888888888555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103218.4391979IPR001471AP2/ERF domain
PRINTSPR003674.2E-72031IPR001471AP2/ERF domain
CDDcd000184.75E-162172No hitNo description
SMARTSM003801.6E-132185IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-152170IPR016177DNA-binding domain
PfamPF008473.8E-102162IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-212172IPR001471AP2/ERF domain
PRINTSPR003674.2E-74258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
AAALGAGRAV AEQDPEGAAN KGVRRRPWGK WAAEIRDPIK GVRVWPGTFP SDEAAALAYD  60
PTARDIRRPR SRSWRLGWVM AGRPAGAPLA RWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-131671258ATERF1
3gcc_A2e-131671258ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo011296.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0685515e-48BT068551.1 Zea mays full-length cDNA clone ZM_BFb0310P02 mRNA, complete cds.
GenBankEU9557155e-48EU955715.1 Zea mays clone 1543173 ethylene-responsive element binding protein 2 mRNA, complete cds.
GenBankEU9559815e-48EU955981.1 Zea mays clone 1554709 ethylene-responsive element binding protein 2 mRNA, complete cds.
GenBankKJ7276125e-48KJ727612.1 Zea mays clone pUT5520 AP2-EREBP transcription factor (EREB182) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024387702.13e-16uncharacterized protein LOC112288086
RefseqXP_026394553.11e-16ethylene-responsive transcription factor ERF109-like
RefseqXP_026434605.11e-16ethylene-responsive transcription factor ERF109-like
SwissprotQ8H0T51e-16ERF73_ARATH; Ethylene-responsive transcription factor ERF073
TrEMBLA0A1E5W2M96e-56A0A1E5W2M9_9POAL; Uncharacterized protein (Fragment)
STRINGEFJ067792e-17(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50203763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.15e-18ERF family protein
Publications ? help Back to Top
  1. Yang CY,Huang YC,Ou SL
    ERF73/HRE1 is involved in H2O2 production via hypoxia-inducible Rboh gene expression in hypoxia signaling.
    Protoplasma, 2017. 254(4): p. 1705-1714
    [PMID:27995331]