PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do011504.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family AP2
Protein Properties Length: 648aa    MW: 67579.9 Da    PI: 7.1407
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do011504.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.13.7e-12301357155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  Do011504.1 301 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 357
                 78*******************77776664346655.77******************98 PP
2AP247.93.3e-15400451155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV+++++ grW A+I  +s    +k  +lg+f t eeAa+a++ a+ k++g
  Do011504.1 400 SIYRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 451
                 57****************999754...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.6E-9301357IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-14301366IPR016177DNA-binding domain
CDDcd000181.69E-17301366No hitNo description
SMARTSM003804.4E-22302371IPR001471AP2/ERF domain
PROSITE profilePS5103217.293302365IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-12302365IPR001471AP2/ERF domain
PRINTSPR003673.8E-6303314IPR001471AP2/ERF domain
PfamPF008471.7E-10400451IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-18400460IPR016177DNA-binding domain
CDDcd000186.63E-24400461No hitNo description
PROSITE profilePS5103219.137401459IPR001471AP2/ERF domain
SMARTSM003803.9E-34401465IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-18401459IPR001471AP2/ERF domain
PRINTSPR003673.8E-6441461IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MTSNSCQNLS SCSTGGSDAA VGGGGSWLGF SLSPHMAGTI DGGDGSNAVQ VQQHHGGLFY  60
PPVVSSSPAP FCYALGGGQD GVATAGANGG GVFYPGLSSM PLKADGSLCI MEVLHRSEQE  120
HHGVVVSSAS PKLEDFLGAG PTMALSLDNS SFYYGGGHGH HGHGQDQAAY LQPLHCAVIP  180
GSGGHGHDVY GGHAQLVDEQ SAAAMAASWF SARGGGGYDV NGAGAILPVQ GHAHPLSLSM  240
SSGTGSQSSC VTMQVGPYPH ADAVAEYIAM DGSKKRGGGG AGQKQPTVHR KSIDTFGQRT  300
SQYRGVTRHR WTGRYEAHLW DNSCKKEGQT RKGRQGGYDM EEKAARAYDL AALKYWGTST  360
HINFPIEDYR EELEEMKNMT RQEYVAHLRR KSSGFSRGAS IYRGVTRHHQ HGRWQARIGR  420
VSGNKDLYLG TFSTQEEAAE AYDVAAIKFR GLNAVTNFDI TRYDVDKIME SNTLLPGEQV  480
RRKKDGEGGV SESDAVTNAA AALVQAGNCA AADTWKIQGA AAALPAVARS DALQVHGGQQ  540
HQDLLSSEAF SLLHGIVSVD AGGQGGSASA QMSNASSLAP SVSNSREQSP DRGVGGGGLA  600
MLFAKPAAAA SKLACPLPLG SWVSPSPVSA RPGVSIAHLP MFAAWTDA
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo011504.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3753181e-176AK375318.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3090N20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981612.10.0AP2-like ethylene-responsive transcription factor ANT isoform X4
SwissprotQ84Z021e-169CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A1E5VRG80.0A0A1E5VRG8_9POAL; AP2-like ethylene-responsive transcription factor ANT
STRINGPavir.J24038.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-122AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]