PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do011572.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 283aa    MW: 29362.8 Da    PI: 9.0271
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do011572.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.36.5e-0681100221
                 EETTTTEEESSHHHHHHHHH CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                 +C+ Cgk+F+++  L  H+r
  Do011572.1  81 SCTECGKRFPSWKALFGHMR 100
                 6******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.003280102IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.55680102IPR007087Zinc finger, C2H2
SuperFamilySSF576675.24E-781102No hitNo description
Gene3DG3DSA:3.30.160.607.3E-481102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
PfamPF139126.9E-982103IPR007087Zinc finger, C2H2
SuperFamilySSF576675.24E-7191218No hitNo description
PROSITE profilePS501579.515196218IPR007087Zinc finger, C2H2
SMARTSM003550.87196218IPR015880Zinc finger, C2H2-like
PfamPF139127.3E-11196220IPR007087Zinc finger, C2H2
PROSITE patternPS000280198218IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MAASVQPAAS PSPPPRPPLP LPPPPHHDTT LTLALALPPP PFACVLSPRP LHARRPWPDG  60
ASSSSSVLAT VRSSPTGETP SCTECGKRFP SWKALFGHMR CHPECQWRGI MPPPHFRLHQ  120
VVGGCGSPLA VAAAAVEHQF TVQELKIATS LLMLAGARPD GGKGKKSVLA SSTTKGSCGT  180
PTSPPTAATP PRCADHKCSV CARGFTTGQA LGGHKRCHWE KACAEGMAVA IGTPSRCSTL  240
ATSSQAAATM LDLNLSPSGT MPLPRKSDDD GSLNASLDLK LGY
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo011572.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9751886e-41EU975188.1 Zea mays clone 483820 nucleic acid binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682354.11e-111zinc finger protein ZAT3
TrEMBLA0A1E5VTS10.0A0A1E5VTS1_9POAL; Uncharacterized protein
STRINGSi004657m1e-109(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116122130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.13e-25C2H2-like zinc finger protein