PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do011575.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

Dof

Protein Properties

Length: 252aa MW: 26375.5 Da PI: 7.2107

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do011575.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.8	2.4e-38	49	106	4	61
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + +cprC+s++tkfCyynny++sqPr+fCk+CrryWtkGG+lrnvPvGgg+rk+ +s Do011575.1 49 EGDPCPRCESRDTKFCYYNNYNTSQPRHFCKGCRRYWTKGGTLRNVPVGGGTRKKPSS 106 6789**************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-25	49	100	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.425	51	105	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.8E-32	52	103	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	53	89	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MQEVAAEPGR GRAAQQQQFA GVDLRRPKGY AAPVVSQAAT AARAATPAEG DPCPRCESRD 60 TKFCYYNNYN TSQPRHFCKG CRRYWTKGGT LRNVPVGGGT RKKPSSSPSA YAAAANADKP 120 KKPSKKKRRV VVAAQDQEPA AAADTVVAAA PAADSAKTAK IETATPTTTD PASEITTEIV 180 VPAAAEEEDS LAHLLQPDVA LGLGISDFSA GKGLDVLEPD SFEWPAAFDL GTCWGSAGFA 240 DPDPAGLFLN LP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	128	KKKRR
2	124	129	KKKRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence at the MNF1-binding site.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do011575.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU965859	2e-80	EU965859.1 Zea mays clone 289437 dof zinc finger protein MNB1A mRNA, complete cds.
GenBank	EU969388	2e-80	EU969388.1 Zea mays clone 329608 dof zinc finger protein MNB1A mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822538.1	1e-109	dof zinc finger protein MNB1A-like
Swissprot	P38564	2e-77	MNB1A_MAIZE; Dof zinc finger protein MNB1A
TrEMBL	A0A1E5VTN3	0.0	A0A1E5VTN3_9POAL; Dof zinc finger protein MNB1A
STRING	Sb07g028850.1	2e-83	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	2e-27	DOF zinc finger protein 1

Publications ? help Back to Top
Yanagisawa S,Izui K Molecular cloning of two DNA-binding proteins of maize that are structurally different but interact with the same sequence motif. J. Biol. Chem., 1993. 268(21): p. 16028-36 [PMID:8340424]