PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do011589.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family YABBY
Protein Properties Length: 119aa    MW: 13158 Da    PI: 7.5547
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do011589.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY31.17.8e-10427225
       YABBY  2 dvfssseqvCyvqCnfCntilavs 25
                ++  ++++vCyv+CnfCnt+lav 
  Do011589.1  4 QIAPAADHVCYVHCNFCNTVLAVR 27
                567899****************95 PP
2YABBY74.63.3e-235591134170
       YABBY 134 keeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                  eei+rika+nPdishreafs+aaknWah+P+ihfgl
  Do011589.1  55 WEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 91 
                 59*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046906.6E-7927IPR006780YABBY protein
PfamPF046902.9E-215691IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MSAQIAPAAD HVCYVHCNFC NTVLAVRSIY MLPAYDLSSY ISLSLVQLSL SLSLWEEIRR  60
IKANNPDISH REAFSTAAKN WAHYPNIHFG LSPGREGGNK LVDEAVSPTP APQKIQGLY
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo011589.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0605292e-35BT060529.1 Zea mays full-length cDNA clone ZM_BFb0012C02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804907.11e-37protein YABBY 6-like isoform X1
RefseqXP_025804908.19e-38protein YABBY 6-like isoform X2
SwissprotQ2QM173e-31YAB6_ORYSJ; Protein YABBY 6
TrEMBLA0A1E5W2R31e-83A0A1E5W2R3_9POAL; Protein YABBY 6
STRINGOMERI12G13400.18e-38(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.19e-20YABBY family protein