PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do011596.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MIKC_MADS
Protein Properties Length: 266aa    MW: 29579.3 Da    PI: 9.4481
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do011596.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.31.1e-29959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien++ rqvtf+kRrng+lKKA+ELS+LCdae+a+++fss+g+lyeyss
  Do011596.1  9 KRIENNTSRQVTFCKRRNGLLKKAYELSILCDAEIALVVFSSRGRLYEYSS 59
                79***********************************************96 PP
2K-box103.72.4e-34831749100
       K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  + + +++ qqe+akL ++i++Lq+++Rhl+G+++++++ keL++Le++Le+++ +iRskK+elll++ie++qk+e +lq+en  Lr+k+ee
  Do011596.1  83 IDVNSQQYFQQEAAKLHQQIQTLQNSNRHLMGDSIGNMTAKELKSLETRLERAIGRIRSKKHELLLAEIEYMQKREADLQSENLFLRAKVEE 174
                 5567789**********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.8E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.543161IPR002100Transcription factor, MADS-box
CDDcd002658.74E-45275No hitNo description
SuperFamilySSF554552.09E-32274IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.7E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-323859IPR002100Transcription factor, MADS-box
PfamPF014866.1E-2785172IPR002487Transcription factor, K-box
PROSITE profilePS5129714.67988178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MGRGKIEIKR IENNTSRQVT FCKRRNGLLK KAYELSILCD AEIALVVFSS RGRLYEYSSN  60
SVRSTIERYK KASASTSGTA PVIDVNSQQY FQQEAAKLHQ QIQTLQNSNR HLMGDSIGNM  120
TAKELKSLET RLERAIGRIR SKKHELLLAE IEYMQKREAD LQSENLFLRA KVEEAERAQQ  180
EAAEEHQMAA AAASGGATTT TELQALPASF DPRGYYLQVQ ASMLAASAAS SSSQHPQGQA  240
EHHHLQTALH LGYHIKVDSS ATKGFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-20173173Myocyte-specific enhancer factor 2B
1tqe_Q1e-20173173Myocyte-specific enhancer factor 2B
1tqe_R1e-20173173Myocyte-specific enhancer factor 2B
1tqe_S1e-20173173Myocyte-specific enhancer factor 2B
6c9l_A1e-20173173Myocyte-specific enhancer factor 2B
6c9l_B1e-20173173Myocyte-specific enhancer factor 2B
6c9l_C1e-20173173Myocyte-specific enhancer factor 2B
6c9l_D1e-20173173Myocyte-specific enhancer factor 2B
6c9l_E1e-20173173Myocyte-specific enhancer factor 2B
6c9l_F1e-20173173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo011596.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0621100.0BT062110.1 Zea mays full-length cDNA clone ZM_BFb0215E12 mRNA, complete cds.
GenBankKJ7269310.0KJ726931.1 Zea mays clone pUT3477 MADS transcription factor (MADS41) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970830.11e-157MADS-box transcription factor 21
SwissprotQ8RU311e-131MAD21_ORYSJ; MADS-box transcription factor 21
TrEMBLA0A1E5WD870.0A0A1E5WD87_9POAL; MADS-box transcription factor 21
STRINGSi002551m1e-157(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64937144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.11e-88MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Dreni L, et al.
    The D-lineage MADS-box gene OsMADS13 controls ovule identity in rice.
    Plant J., 2007. 52(4): p. 690-9
    [PMID:17877710]