PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do011627.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 330aa    MW: 34913.1 Da    PI: 6.6335
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do011627.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35e-20145196256
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 +y+GVr+++ +g+++AeIrdp+++g   r++lg+++ta eAa+a+++a+ +++g+
  Do011627.1 145 KYRGVRQRP-WGKFAAEIRDPKKRG--SRVWLGTYDTAVEAARAYDRAAFRMRGA 196
                 8********.***********8876..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-32144204IPR001471AP2/ERF domain
PROSITE profilePS5103224.263145203IPR001471AP2/ERF domain
SMARTSM003801.6E-38145209IPR001471AP2/ERF domain
CDDcd000182.48E-31145204No hitNo description
PfamPF008474.1E-14145195IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-22145204IPR016177DNA-binding domain
PRINTSPR003672.0E-13146157IPR001471AP2/ERF domain
PRINTSPR003672.0E-13185205IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MNFSGDVDDF SLQLIREQLL GGEACLPVAP DAAAYSASSL HHPAQMAAFQ HPAAFMPQQQ  60
QQAAYVDLTN EYAAAAVAEA PFRAEPVMIR FGGEPSPVSD PSRRPLLTIS LPPTSHAWGP  120
AAGAPLAAHQ QAAAAAALDV NDFRKYRGVR QRPWGKFAAE IRDPKKRGSR VWLGTYDTAV  180
EAARAYDRAA FRMRGAKAIL NFPNEVGSRG ADFLAPPPQP PQSASQNKRK LPHDAEATAT  240
AGAEPATKSV KAEAFGSPAS SSLTTSLSPA TTTASTVTAT SSPSSEAGGA YEVFPMTPSS  300
WMWEQLECVF GSLSPLSPHP QLGFPEVTVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-28144208468ATERF1
3gcc_A5e-28144208468ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo011627.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828794.11e-156ethylene-responsive transcription factor ERF105-like
TrEMBLA0A1E5VWX40.0A0A1E5VWX4_9POAL; Uncharacterized protein
STRINGGRMZM2G057386_P011e-153(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.19e-22ERF family protein