PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do011792.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family HB-other
Protein Properties Length: 472aa    MW: 50874.2 Da    PI: 7.08
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do011792.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.21.4e-083924301854
                 HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 +Fe+   +yp+ +e+e LA + gL+ +qV++WF N R +
  Do011792.1 392 MFENflRPYPKDNEKEMLAVRSGLSRSQVSNWFINARVR 430
                 57766689*****************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075261.9E-14202326IPR006563POX domain
PROSITE profilePS5007111.758371434IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-25373446IPR009057Homeodomain-like
SuperFamilySSF466896.42E-16374443IPR009057Homeodomain-like
SMARTSM003894.8E-7374438IPR001356Homeobox domain
CDDcd000862.85E-11374435No hitNo description
PfamPF059202.1E-15391430IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MTGNASYQQL GVDAMMTGSF VSSGGGGFHD GSFGFGEPAD VAASFLVDGG SMLAGQLQLI  60
RAAVPQSVSP EETTRGTYGP SPSDVTVAHA PKVTKLAGEM MEGSWIHEPY YCPTWFSGDG  120
FRDPFAAAAS ELSLRLRAEP SPAGAVNVSR LPDQSSEVSC SSLTHASSSA ASSVFQLPCG  180
GGQMGRPGLL HFSQVLSRWP GYTHVTQQTL DEFVGCLLQD VAGFAGSAGG GEASCPMPMS  240
SCSKTTSSNL SVFLGSEEHT HQKLENDLQK LLQLLDQRCN QCMDEIQSAA SKYGSMVRPG  300
GGGALLAPFS HRAVSAMHRR LRARITGEIA AASRRGEPSS SSLMLADRER SWESAFIQKH  360
WALRQLRRGD QQSWRPQRGL PEKSVAVLKA WMFENFLRPY PKDNEKEMLA VRSGLSRSQV  420
SNWFINARVR LWKPMIEEMY EDLKKASGGG EGVAARTSEQ QSWVSTSGME SL
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo011792.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813413.10.0homeobox protein ATH1-like
TrEMBLA0A1E5W1440.0A0A1E5W144_9POAL; Homeobox protein ATH1
STRINGPavir.Db01271.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.16e-49homeobox gene 1