PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do011877.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 319aa    MW: 34224.2 Da    PI: 10.0587
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do011877.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-05154172523
                 TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                 +Cgk F+r  nL+ H+r H
  Do011877.1 154 ICGKGFRRDANLRMHMRAH 172
                 8****************99 PP
2zf-C2H212.80.00037239263123
                 EEETTTT..EEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCg..ksFsrksnLkrHirtH 23 
                 y C+ Cg  k+F    +L++H+r +
  Do011877.1 239 YACERCGgkKRFAVLADLRSHLRHC 263
                 89********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.72E-5149173No hitNo description
SMARTSM003550.86150172IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.6150172IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-5152173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355130201234IPR015880Zinc finger, C2H2-like
SMARTSM0035517239262IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MSGGKPSGAL VGAAAGGAGG AHGDPRVALL RLAALGDRVA TVRGRIAASI SGEAQPLSYA  60
EIQSVSSEIS SATQLVVLNA ASLLASSVPF PAPPPPPTAA APTPSLAPVR EIPAATASTQ  120
EQPLEAASKG DGDYEVVELE ATELLAEHVH FYEICGKGFR RDANLRMHMR AHGDRFKTRD  180
TLPHPVHGKP KPPAAGRKVR FSCPFTGCNR NRVHHRFRPL KSAVCARNHF RRSHCPKLYA  240
CERCGGKKRF AVLADLRSHL RHCGEEAQWR CSCATTFSRK DKLFGHLALF EGHTPAVFVV  300
SSIEGGNEMF AKMLKTQLF
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo011877.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794886.11e-153protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
TrEMBLA0A1E5VDK31e-166A0A1E5VDK3_9POAL; Zinc finger protein STOP1-like protein
STRINGGRMZM2G023988_P021e-145(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125503236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.13e-58C2H2 family protein