PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do011892.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

HD-ZIP

Protein Properties

Length: 232aa MW: 25637.7 Da PI: 6.404

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do011892.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.6	5.1e-19	58	111	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq+e Le F+++r++ + ++ +LA++lgL+ +qV vWFqNrRa++k Do011892.1 58 KKRRLSDEQVEMLELSFREERKLETGRKVHLAAELGLDPKQVAVWFQNRRARHK 111 45589***********************************************99 PP
2	HD-ZIP_I/II	116.3	1.8e-37	58	148	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkrrls+eqv++LE sF+ee+kLe+ rKv+la eLgl+p+qvavWFqnrRAR+k+k lE+++++Lk+a+da ++++Le+ev +L+e+l+ Do011892.1 58 KKRRLSDEQVEMLELSFREERKLETGRKVHLAAELGLDPKQVAVWFQNRRARHKSKLLEEEFAKLKQAHDAAILHKCHLENEVMRLKERLE 148 9**************************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.19E-17	53	112	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.277	53	113	IPR001356	Homeobox domain
SMART	SM00389	4.9E-17	56	117	IPR001356	Homeobox domain
Pfam	PF00046	2.6E-16	58	111	IPR001356	Homeobox domain
CDD	cd00086	1.53E-15	58	113	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.7E-18	58	111	IPR009057	Homeodomain-like
PRINTS	PR00031	1.2E-5	84	93	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	88	111	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.2E-5	93	109	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MEQYDGLFPS AYVDSSSSLL VPNAGAAQGE RPRARRRRRR AARCGGDGGE LDGGGDPKKR 60 RLSDEQVEML ELSFREERKL ETGRKVHLAA ELGLDPKQVA VWFQNRRARH KSKLLEEEFA 120 KLKQAHDAAI LHKCHLENEV MRLKERLEVT EEELTRLRSA GSHAVSGDGG DVMGRVVCSA 180 SPSSSFSTGT CYQQPGVGGG GDHLGDDDLL YVPDYAYADN SVVEWFSLYG LM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	30	39	RPRARRRRRR
2	34	42	RRRRRRAAR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do011892.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT039959	0.0	BT039959.1 Zea mays full-length cDNA clone ZM_BFc0054M14 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004958136.1	1e-115	homeobox-leucine zipper protein HOX14
Swissprot	Q7XI85	6e-87	HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14
TrEMBL	A0A1E5VQE4	1e-169	A0A1E5VQE4_9POAL; Homeobox-leucine zipper protein HOX14
STRING	Si031009m	1e-115	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2006	38	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	6e-34	homeobox protein 40

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]