PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do011993.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

Whirly

Protein Properties

Length: 198aa MW: 21786.8 Da PI: 9.5876

Description

Whirly family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do011993.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Whirly	112.4	3.5e-35	74	160	53	139
Whirly 53 qsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 + f+ls+tev++l++l++ esceffhdp++k+s+eG+v+k+l++ Pl sG+fvn++v n+++k+ +++svP++kaefav+r++l+ Do011993.1 74 ELFSLSPTEVGSLISLGPAESCEFFHDPSMKSSHEGQVKKSLSITPLGSDSGYFVNITVLNNVQKTTDRLSVPITKAEFAVMRTALS 160 67**********************************************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.30.31.10	2.2E-7	41	73	IPR009044	ssDNA-binding transcriptional regulator
SuperFamily	SSF54447	4.0E-52	47	198	IPR009044	ssDNA-binding transcriptional regulator
Pfam	PF08536	8.9E-33	71	157	IPR013742	Plant transcription factor
Gene3D	G3DSA:2.30.31.10	3.4E-42	74	176	IPR009044	ssDNA-binding transcriptional regulator

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MLRLSRFLPS ASRRGFDLKE TLWSGSLTFQ QAVSTSAANL DENSSVKKFA SYTVFKGKAA 60 LSIHPILPSF SKIELFSLSP TEVGSLISLG PAESCEFFHD PSMKSSHEGQ VKKSLSITPL 120 GSDSGYFVNI TVLNNVQKTT DRLSVPITKA EFAVMRTALS FALPHIMGWD QVLTHHPAPP 180 ASSKPRVERP HPDSEWER

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4kop_A	1e-50	49	175	12	169	Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B	1e-50	49	175	12	169	Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C	1e-50	49	175	12	169	Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D	1e-50	49	175	12	169	Single-stranded DNA-binding protein WHY2, mitochondrial
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Functional Description ? help Back to Top
Source	Description
UniProt	Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269\|PubMed:21911368}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do011993.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP099133	1e-120	FP099133.1 Phyllostachys edulis cDNA clone: bphyem106m01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004951836.1	1e-130	single-stranded DNA-binding protein WHY2, mitochondrial
Swissprot	D9J034	2e-52	WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBL	A0A1E5VBK3	1e-142	A0A1E5VBK3_9POAL; Single-stranded DNA-bindig protein WHY2, mitochondrial
STRING	Pavir.Ab00418.1.p	1e-128	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3012	38	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71260.1	5e-52	WHIRLY 2