PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012016.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family M-type_MADS
Protein Properties Length: 394aa    MW: 42199.8 Da    PI: 5.1383
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012016.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF24.73e-084981941
                HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
      SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifs 41
                r  t+ +Rr g+  K + L +LC++e+ +i f 
  Do012016.1 49 RRATYKNRRDGLVQKTSQLATLCGVEAILICFE 81
                778***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006610.2044980IPR002100Transcription factor, MADS-box
PfamPF003191.0E-94982IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-949122IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MSGVARQLVL IFIQTQAATS IGAQYFFSGF KQNNLGTRML ICAGVCDFRR ATYKNRRDGL  60
VQKTSQLATL CGVEAILICF EPKPAGSGQD GGGAAAVTTW PAHREDVLNL ITKYRDTPAD  120
KIRHSFTAAT YYQEELAKQQ RRLLKIEQCG SDMLSLQDCC LADLSLADLG VLLGTLDETL  180
RKAQQRIVAL GGHVVHDDDD DVPSATAAMV TAPMPLVEYN SFDLAFGMPD PAGSMVTQYY  240
YPPHDLLPQP VALQPPPPPC LAFQMPPPAS YTFQMPPPTI IAPDDLGMTG AGTMDFLPFA  300
MNFPKGGDTM AAAGFYDDFM PGFDGTGGGA YVDDDYVAGG QGFAAGHACA GYQHDEHHMP  360
AGHAAAFQLR NGFAGLPGSS SSSTTSFQGR FQKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012016.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2T7EG121e-164A0A2T7EG12_9POAL; Uncharacterized protein
STRINGSi039273m1e-136(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143511825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31640.14e-08AGAMOUS-like 92