PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012167.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 386aa    MW: 39637.2 Da    PI: 6.3894
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012167.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59e-20161210255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  Do012167.1 161 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 210
                 7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-13161210IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-22161219IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.5E-33161219IPR001471AP2/ERF domain
PROSITE profilePS5103225.686161218IPR001471AP2/ERF domain
SMARTSM003801.3E-36161224IPR001471AP2/ERF domain
PRINTSPR003671.3E-11162173IPR001471AP2/ERF domain
CDDcd000188.05E-15169220No hitNo description
PRINTSPR003671.3E-11184200IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MCFELADQQR GPRHGGGGGG GGWAVKREGG RGGQEEGTPP AGMAMAAGVP REVMSEYYQA  60
QELSTMVSAL TQVVAGGAGP SVSVWAGGAP RGSAPEQQAM HGGYAHEMGS YHGAPSPEFA  120
GSEQGSDTTQ SAAAAMEEHH SHSAAMSCSQ DQEGPETPRR RYRGVRQRPW GKWAAEIRDP  180
HKAARVWLGT FETAEAAARA YDEAALRFRG SRAKLNFPED ARLHPASSTG SSVTAPGSSS  240
APLAGAAASV SPAGYHAGAT QAADYLRYQM LLQGATGGNQ GTLPPFYTGM SNPYGGGGAL  300
SNPYGGVGVA GGNTSGVLGS YYSFPPSSVS VATVPPSSAS SAPGYCYSSP HDSHQSESSA  360
AAAELNWDSS LAHWYDSGYP PPPHTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-23162218663ATERF1
3gcc_A3e-23162218663ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012167.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN5644301e-85FN564430.1 Triticum aestivum chromosome 3B-specific BAC library, contig ctg0464b.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311254.11e-121ethylene-responsive transcription factor ABR1
TrEMBLA0A1E5WKI70.0A0A1E5WKI7_9POAL; Uncharacterized protein
STRINGSi002010m1e-135(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62322649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.19e-20ethylene response factor 110